Gm47939 Gene Detail

Summary

• Symbol
  Gm47939
• Name
  predicted gene, 47939

• Feature Type
  lncRNA gene
• IDs
  MGI:6097203
  NCBI Gene: 115487386
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:25775177-25779814 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  50 from dbSNP Build 142
• Strain Annotations
  28

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097203	lncRNA gene	Chr10:25775177-25779814 (+)
129S1/SvImJ	ENSMUSG00200009642	lncRNA gene	Chr10:22603922-22606884 (+)
A/J	ENSMUSG00195014266	lncRNA gene	Chr10:22906193-22909160 (+)
AKR/J	ENSMUSG00220011328	lncRNA gene	Chr10:22586611-22589573 (+)
BALB/cJ	ENSMUSG00180018652	lncRNA gene	Chr10:23035030-23037987 (+)
C3H/HeJ	ENSMUSG00175026014	lncRNA gene	Chr10:22703267-22706229 (+)
C57BL/6NJ	ENSMUSG00215012915	lncRNA gene	Chr10:22566623-22571260 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027900	lncRNA gene	ChrX:10337979-10342616 (-)
CAST/EiJ	ENSTCUG00005010264	lncRNA gene	Chr9:76316499-76320565 (-)
CAST/EiJ	ENSTCUG00005027912	lncRNA gene	ChrX:11639920-11651184 (+)
CAST/EiJ	ENSTCUG00005015098	lncRNA gene	Chr18:18727255-18731892 (-)
CAST/EiJ	ENSTCUG00005014434	lncRNA gene	Chr10:22348729-22353366 (-)
CAST/EiJ	ENSTCUG00005010295	lncRNA gene	Chr3:44640343-44644980 (+)
CAST/EiJ	ENSTCUG00005028769	lncRNA gene	Chr18:50556524-50561162 (-)
CAST/EiJ	ENSTCUG00005025947	lncRNA gene	Chr5:92832800-92837427 (-)
CAST/EiJ	ENSTCUG00005011851	lncRNA gene	Chr13:92270766-92275404 (-)
CAST/EiJ	ENSTCUG00005008746	lncRNA gene	Chr6:78815572-78820209 (+)
CBA/J	ENSMUSG00210023356	lncRNA gene	Chr10:22681442-22686079 (+)
CBA/J	ENSMUSG00210023769	lncRNA gene	Chr10:23709457-23714088 (-)
DBA/2J	ENSMUSG00185007631	lncRNA gene	Chr10:22853458-22858095 (+)
FVB/NJ	ENSMUSG00205010758	lncRNA gene	Chr10:22841738-22844705 (+)
JF1/MsJ	ENSUMUG00000018492	lncRNA gene	Chr10:22629035-22632006 (+)
LP/J	ENSMUSG00230012812	lncRNA gene	Chr10:24638437-24641399 (+)
NOD/ShiLtJ	ENSMUSG00190016360	lncRNA gene	Chr10:22986918-22989870 (+)
NZO/HlLtJ	ENSMUSG00225031513	lncRNA gene	Chr10:28897303-28900265 (+)
PWK/PhJ	ENSLUMG00010010202	lncRNA gene	Chr10:22539996-22543048 (+)
SPRET/EiJ	ENSMSPG00010015389	lncRNA gene	Chr10:23288717-23291760 (+)
WSB/EiJ	ENSIUOG00005031389	lncRNA gene	Chr10:22274544-22277496 (+)

Homology

• Gene Tree
  Gm47939
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30

• Ensembl
  ENSMUSG00000112324 (Evidence)
• NCBI Gene
  115487386

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112324	Ensembl Gene Model | MGI Sequence Detail	4638	C57BL/6J
transcript	ENSMUST00000219283	Ensembl | MGI Sequence Detail	2661	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;