Gm47904 Gene Detail

Summary

• Symbol
  Gm47904
• Name
  predicted gene, 47904

• Feature Type
  lncRNA gene
• IDs
  MGI:6097144
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:4141286-4142636 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097144	lncRNA gene	Chr13:4141286-4142636 (+)
129S1/SvImJ	ENSMUSG00200007072	lncRNA gene	Chr13:1312785-1314135 (+)
A/J	ENSMUSG00195013279	lncRNA gene	Chr13:720969-722319 (+)
AKR/J	ENSMUSG00220013142	lncRNA gene	Chr13:1011677-1013027 (+)
BALB/cJ	ENSMUSG00180009562	lncRNA gene	Chr13:1133140-1134490 (+)
C3H/HeJ	ENSMUSG00175008706	lncRNA gene	Chr13:1163291-1164641 (+)
C57BL/6NJ	ENSMUSG00215017236	lncRNA gene	Chr13:1383104-1384454 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024820	lncRNA gene	Chr13:1380327-1381677 (+)
CBA/J	ENSMUSG00210022933	lncRNA gene	Chr13:701974-703324 (+)
DBA/2J	ENSMUSG00185024524	lncRNA gene	Chr13:1389733-1391083 (+)
FVB/NJ	ENSMUSG00205027878	lncRNA gene	Chr13:1134829-1136179 (+)
JF1/MsJ	ENSUMUG00000012846	lncRNA gene	Chr13:1380793-1382143 (+)
LP/J	ENSMUSG00230008071	lncRNA gene	Chr13:10853208-10854558 (+)
NOD/ShiLtJ	ENSMUSG00190013067	lncRNA gene	Chr13:848910-850260 (+)
NZO/HlLtJ	ENSMUSG00225034791	lncRNA gene	Chr13:4740894-4742244 (+)
PWK/PhJ	ENSLUMG00010017231	lncRNA gene	Chr13:756092-757442 (+)
SPRET/EiJ	ENSMSPG00010026585	lncRNA gene	Chr13:795032-796382 (+)
WSB/EiJ	ENSIUOG00005023112	lncRNA gene	Chr13:743929-745279 (+)

Homology

• Gene Tree
  Gm47904
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000113788 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113788	Ensembl Gene Model | MGI Sequence Detail	1351	C57BL/6J
transcript	ENSMUST00000221310	Ensembl | MGI Sequence Detail	1285	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;