Gm47901 Pseudogene Detail

Summary

• Symbol
  Gm47901
• Name
  predicted gene, 47901

• Feature Type
  pseudogene
• IDs
  MGI:6097139
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:85775231-85775493 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097139	pseudogene	Chr12:85775231-85775493 (+)
129S1/SvImJ	ENSMUSG00200050330	pseudogene	Chr12:77790447-77790709 (+)
A/J	ENSMUSG00195035897	pseudogene	Chr12:80410107-80410369 (+)
AKR/J	ENSMUSG00220049281	pseudogene	Chr12:78206045-78206307 (+)
BALB/cJ	ENSMUSG00180025643	pseudogene	Chr12:79447833-79448095 (+)
C3H/HeJ	ENSMUSG00175040703	pseudogene	Chr12:82540888-82541150 (+)
C57BL/6NJ	ENSMUSG00215046466	pseudogene	Chr12:78754299-78754561 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032901	pseudogene	Chr12:78715918-78716179 (+)
CBA/J	ENSMUSG00210046583	pseudogene	Chr12:78954085-78954347 (+)
DBA/2J	ENSMUSG00185002618	pseudogene	Chr12:80811341-80811603 (+)
FVB/NJ	ENSMUSG00205040535	pseudogene	Chr12:78622898-78623160 (+)
JF1/MsJ	ENSUMUG00000048191	pseudogene	Chr12:84796445-84796706 (+)
LP/J	ENSMUSG00230045636	pseudogene	Chr12:87873516-87873778 (+)
NOD/ShiLtJ	ENSMUSG00190049631	pseudogene	Chr12:78011103-78011365 (+)
NZO/HlLtJ	ENSMUSG00225052502	pseudogene	Chr12:89910654-89910916 (+)
PWK/PhJ	ENSLUMG00010029298	pseudogene	Chr12:78816368-78816629 (+)
SPRET/EiJ	ENSMSPG00010020201	pseudogene	Chr12:80633037-80633298 (+)
WSB/EiJ	ENSIUOG00005046091	pseudogene	Chr12:78663434-78663696 (+)

Homology

• Gene Tree
  Gm47901
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000113464 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113464	Ensembl Gene Model | MGI Sequence Detail	263	C57BL/6J
transcript	ENSMUST00000220921	Ensembl | MGI Sequence Detail	263	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;