Gm47898 Gene Detail

Summary

• Symbol
  Gm47898
• Name
  predicted gene, 47898

• Feature Type
  lncRNA gene
• IDs
  MGI:6097134
  NCBI Gene: 118568380
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:23778383-23784894 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  304 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097134	lncRNA gene	Chr18:23758246-23784894 (-)
129S1/SvImJ	ENSMUSG00200016483	lncRNA gene	Chr18:20782197-20788708 (-)
A/J	ENSMUSG00195002430	lncRNA gene	Chr18:20928261-20934770 (-)
AKR/J	ENSMUSG00220011532	lncRNA gene	Chr18:20936999-20943510 (-)
BALB/cJ	ENSMUSG00180003594	lncRNA gene	Chr18:21390081-21396594 (-)
C3H/HeJ	ENSMUSG00175024464	lncRNA gene	Chr18:20885360-20891871 (-)
C57BL/6NJ	ENSMUSG00215023836	lncRNA gene	Chr18:20635087-20641596 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016233	lncRNA gene	Chr18:20644875-20651427 (-)
CBA/J	ENSMUSG00210016177	lncRNA gene	Chr18:20939732-20946243 (-)
DBA/2J	ENSMUSG00185022776	lncRNA gene	Chr18:20884913-20891424 (-)
FVB/NJ	ENSMUSG00205022707	lncRNA gene	Chr18:20611311-20617822 (-)
JF1/MsJ	ENSUMUG00000027626	lncRNA gene	Chr18:20968649-20975238 (-)
LP/J	ENSMUSG00230006365	lncRNA gene	Chr18:22978135-22984646 (-)
NOD/ShiLtJ	ENSMUSG00190007006	lncRNA gene	Chr18:20699432-20705943 (-)
NZO/HlLtJ	ENSMUSG00225025783	lncRNA gene	Chr18:22908627-22915140 (-)
PWK/PhJ	ENSLUMG00010003634	lncRNA gene	Chr18:21158772-21165346 (-)
SPRET/EiJ	ENSMSPG00010022554	lncRNA gene	Chr18:21103476-21110001 (-)
WSB/EiJ	ENSIUOG00005002873	lncRNA gene	Chr18:20697729-20704240 (-)

Homology

• Gene Tree
  Gm47898
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000114088 (Evidence)
• NCBI Gene
  118568380

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114088	Ensembl Gene Model | MGI Sequence Detail	6512	C57BL/6J
transcript	ENSMUST00000220789	Ensembl | MGI Sequence Detail	1818	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;