Gm47897 Gene Detail

Summary

• Symbol
  Gm47897
• Name
  predicted gene, 47897

• Feature Type
  lncRNA gene
• IDs
  MGI:6097132
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:66659948-66663182 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  220 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097132	lncRNA gene	Chr10:66659948-66663182 (+)
129S1/SvImJ	ENSMUSG00200017595	lncRNA gene	Chr10:63351765-63354999 (+)
A/J	ENSMUSG00195006262	lncRNA gene	Chr10:63650454-63653688 (+)
AKR/J	ENSMUSG00220028167	lncRNA gene	Chr10:63319293-63322527 (+)
BALB/cJ	ENSMUSG00180007998	lncRNA gene	Chr10:63684980-63688214 (+)
C3H/HeJ	ENSMUSG00175013554	lncRNA gene	Chr10:63519690-63522924 (+)
C57BL/6NJ	ENSMUSG00215004059	lncRNA gene	Chr10:63294538-63297772 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026727	lncRNA gene	Chr10:63254680-63257911 (+)
CBA/J	ENSMUSG00210009704	lncRNA gene	Chr10:63399512-63402746 (+)
DBA/2J	ENSMUSG00185020271	lncRNA gene	Chr10:63762261-63765495 (+)
FVB/NJ	ENSMUSG00205008030	lncRNA gene	Chr10:63464758-63467995 (+)
JF1/MsJ	ENSUMUG00000020962	lncRNA gene	Chr10:64959693-64962925 (+)
LP/J	ENSMUSG00230020192	lncRNA gene	Chr10:65528227-65531464 (+)
NOD/ShiLtJ	ENSMUSG00190008165	lncRNA gene	Chr10:63760021-63763255 (+)
NZO/HlLtJ	ENSMUSG00225045320	lncRNA gene	Chr10:69817000-69820234 (+)
PWK/PhJ	ENSLUMG00010008166	lncRNA gene	Chr10:63351257-63354488 (+)
SPRET/EiJ	ENSMSPG00010022901	lncRNA gene	Chr10:65010436-65013677 (+)
WSB/EiJ	ENSIUOG00005033871	lncRNA gene	Chr10:63286032-63289269 (+)

Homology

• Gene Tree
  Gm47897
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000112514 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112514	Ensembl Gene Model | MGI Sequence Detail	3235	C57BL/6J
transcript	ENSMUST00000217783	Ensembl | MGI Sequence Detail	426	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;