Gm47877 Gene Detail

Summary

• Symbol
  Gm47877
• Name
  predicted gene, 47877

• Feature Type
  lncRNA gene
• IDs
  MGI:6097101
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:54938067-54946713 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  350 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097101	lncRNA gene	Chr9:54938067-54946713 (+)
129S1/SvImJ	ENSMUSG00200035811	lncRNA gene	Chr9:52065021-52073746 (+)
A/J	ENSMUSG00195042011	lncRNA gene	Chr9:51763647-51772293 (+)
AKR/J	ENSMUSG00220030838	lncRNA gene	Chr9:51896583-51905229 (+)
BALB/cJ	ENSMUSG00180020086	lncRNA gene	Chr9:51877026-51885672 (+)
C3H/HeJ	ENSMUSG00175022147	lncRNA gene	Chr9:51888818-51897464 (+)
C57BL/6NJ	ENSMUSG00215032024	lncRNA gene	Chr9:51862169-51870815 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022037	lncRNA gene	Chr9:51797451-51806157 (+)
CBA/J	ENSMUSG00210040926	lncRNA gene	Chr9:51991433-52000150 (+)
DBA/2J	ENSMUSG00185044818	lncRNA gene	Chr9:52020981-52029706 (+)
FVB/NJ	ENSMUSG00205042103	lncRNA gene	Chr9:52301405-52310050 (+)
JF1/MsJ	ENSUMUG00000048450	lncRNA gene	Chr9:52027616-52036307 (+)
LP/J	ENSMUSG00230040426	lncRNA gene	Chr9:52264999-52273724 (+)
NOD/ShiLtJ	ENSMUSG00190044961	lncRNA gene	Chr9:52079175-52087821 (+)
NZO/HlLtJ	ENSMUSG00225028337	lncRNA gene	Chr9:52286948-52295594 (+)
PWK/PhJ	ENSLUMG00010039154	lncRNA gene	Chr9:51990622-51999312 (+)
SPRET/EiJ	ENSMSPG00010029344	lncRNA gene	Chr9:52995832-53004481 (+)
WSB/EiJ	ENSIUOG00005041717	lncRNA gene	Chr9:51489679-51498399 (+)

Homology

• Gene Tree
  Gm47877
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000111050 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111050	Ensembl Gene Model | MGI Sequence Detail	8647	C57BL/6J
transcript	ENSMUST00000217609	Ensembl | MGI Sequence Detail	811	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;