Gm47861 Gene Detail

Summary

• Symbol
  Gm47861
• Name
  predicted gene, 47861

• Feature Type
  lncRNA gene
• IDs
  MGI:6097076
• Alliance
  genome feature page
• Transcription Start Sites
  12 TSS

Location &
Maps

• Sequence Map
  Chr6:129166585-129225291 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1532 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097076	lncRNA gene	Chr6:129166585-129225291 (+)
129S1/SvImJ	ENSMUSG00200046301	lncRNA gene	Chr6:126318685-126328833 (+)
A/J	ENSMUSG00195035046	lncRNA gene	Chr6:125739647-125749814 (+)
AKR/J	ENSMUSG00220039216	lncRNA gene	Chr6:124601276-124611440 (+)
BALB/cJ	ENSMUSG00180040573	lncRNA gene	Chr6:126076641-126086808 (+)
C3H/HeJ	ENSMUSG00175040240	lncRNA gene	Chr6:125756832-125766998 (+)
C57BL/6NJ	ENSMUSG00215030313	lncRNA gene	Chr6:126045404-126055575 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041718	lncRNA gene	Chr6:126077170-126087303 (+)
CBA/J	ENSMUSG00210016806	lncRNA gene	Chr6:125776661-125786827 (+)
DBA/2J	ENSMUSG00185044485	lncRNA gene	Chr6:126477428-126487595 (+)
FVB/NJ	ENSMUSG00205041014	lncRNA gene	Chr6:125332704-125342836 (+)
JF1/MsJ	ENSUMUG00000044128	lncRNA gene	Chr6:125095554-125108085 (+)
LP/J	ENSMUSG00230045655	lncRNA gene	Chr6:127674077-127684243 (+)
NOD/ShiLtJ	ENSMUSG00190038366	lncRNA gene	Chr6:125479734-125489906 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010043754	lncRNA gene	Chr6:124279684-124292262 (+)
SPRET/EiJ	ENSMSPG00010043440	lncRNA gene	Chr6:127014253-127027215 (+)
WSB/EiJ	ENSIUOG00005048341	lncRNA gene	Chr6:126202319-126212457 (+)

Homology

• Gene Tree
  Gm47861
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  47

• Ensembl
  ENSMUSG00000112144 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112144	Ensembl Gene Model | MGI Sequence Detail	58707	C57BL/6J
transcript	ENSMUST00000242473	Ensembl | MGI Sequence Detail	1827	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm47861:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr59119	Chr6:129206339-129206346 (+)	39,758 bp
Tssr59120	Chr6:129206358-129206378 (+)	39,783 bp
Tssr59121	Chr6:129207465-129207476 (+)	40,886 bp
Tssr59122	Chr6:129207499-129207510 (+)	40,920 bp
Tssr59123	Chr6:129207558-129207561 (+)	40,975 bp
Tssr2028	Chr6:129213076-129213092 (+)	46,499 bp
Tssr59129	Chr6:129213125-129213151 (+)	46,553 bp
Tssr59130	Chr6:129213963-129213979 (+)	47,386 bp
Tssr59131	Chr6:129214222-129214233 (+)	47,643 bp
Tssr59132	Chr6:129214255-129214277 (+)	47,681 bp
Tssr59133	Chr6:129215121-129215162 (+)	48,557 bp
Tssr59134	Chr6:129215384-129215392 (+)	48,803 bp