Gm47845 Pseudogene Detail

Summary

• Symbol
  Gm47845
• Name
  predicted gene, 47845

• Feature Type
  pseudogene
• IDs
  MGI:6097050
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:33087081-33087628 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097050	pseudogene	Chr10:33087081-33087628 (+)
129S1/SvImJ	ENSMUSG00200010753	pseudogene	Chr10:29929660-29930207 (+)
A/J	ENSMUSG00195014390	pseudogene	Chr10:30207900-30208448 (+)
AKR/J	ENSMUSG00220011379	pseudogene	Chr10:29896045-29896593 (+)
BALB/cJ	ENSMUSG00180018744	pseudogene	Chr10:30327934-30328482 (+)
C3H/HeJ	ENSMUSG00175026746	pseudogene	Chr10:30082857-30083405 (+)
C57BL/6NJ	ENSMUSG00215013462	pseudogene	Chr10:29871094-29871641 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013891	pseudogene	Chr10:29694185-29694725 (+)
CBA/J	ENSMUSG00210023687	pseudogene	Chr10:30010341-30010888 (+)
DBA/2J	ENSMUSG00185007351	pseudogene	Chr10:30163171-30163718 (+)
FVB/NJ	ENSMUSG00205010608	pseudogene	Chr10:30158245-30158793 (+)
JF1/MsJ	ENSUMUG00000019787	pseudogene	Chr10:29922062-29922602 (+)
LP/J	ENSMUSG00230015605	pseudogene	Chr10:31928690-31929237 (+)
NOD/ShiLtJ	ENSMUSG00190015718	pseudogene	Chr10:30276166-30276713 (+)
NZO/HlLtJ	ENSMUSG00225034101	pseudogene	Chr10:36187102-36187649 (+)
PWK/PhJ	ENSLUMG00010010475	pseudogene	Chr10:29885739-29886278 (+)
SPRET/EiJ	ENSMSPG00010021552	pseudogene	Chr10:30910766-30911273 (+)
WSB/EiJ	ENSIUOG00005032521	pseudogene	Chr10:29718658-29719197 (+)

Homology

• Gene Tree
  Gm47845
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000112182 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112182	Ensembl Gene Model | MGI Sequence Detail	548	C57BL/6J
transcript	ENSMUST00000220148	Ensembl | MGI Sequence Detail	364	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;