Gm47833 Gene Detail

Summary

• Symbol
  Gm47833
• Name
  predicted gene, 47833

• Feature Type
  lncRNA gene
• IDs
  MGI:6097031
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:11831536-11842952 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  524 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097031	lncRNA gene	Chr12:11831536-11842952 (+)
129S1/SvImJ	ENSMUSG00200024258	lncRNA gene	Chr12:8820908-8832320 (+)
A/J	ENSMUSG00195016987	lncRNA gene	Chr12:8856233-8868580 (+)
AKR/J	ENSMUSG00220032986	lncRNA gene	Chr12:8920127-8932457 (+)
BALB/cJ	ENSMUSG00180015461	lncRNA gene	Chr12:8848744-8861088 (+)
C3H/HeJ	ENSMUSG00175009702	lncRNA gene	Chr12:8894257-8906585 (+)
C57BL/6NJ	ENSMUSG00215021465	lncRNA gene	Chr12:8675171-8686589 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023877	lncRNA gene	Chr12:8436983-8448536 (+)
CBA/J	ENSMUSG00210013593	lncRNA gene	Chr12:8915842-8928174 (+)
DBA/2J	ENSMUSG00185022103	lncRNA gene	Chr12:8821705-8834029 (+)
FVB/NJ	ENSMUSG00205003517	lncRNA gene	Chr12:8606064-8618395 (+)
JF1/MsJ	ENSUMUG00000037959	lncRNA gene	Chr12:8753415-8765646 (+)
LP/J	ENSMUSG00230022483	lncRNA gene	Chr12:10640480-10651892 (+)
NOD/ShiLtJ	ENSMUSG00190014387	lncRNA gene	Chr12:10077302-10089626 (+)
NZO/HlLtJ	ENSMUSG00225030045	lncRNA gene	Chr12:12739938-12751356 (+)
PWK/PhJ	ENSLUMG00010017193	lncRNA gene	Chr12:8534439-8546666 (+)
SPRET/EiJ	ENSMSPG00010005358	lncRNA gene	Chr12:9303903-9329389 (+)
WSB/EiJ	ENSIUOG00005002499	lncRNA gene	Chr12:8870649-8882065 (+)

Homology

• Gene Tree
  Gm47833
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000113013 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113013	Ensembl Gene Model | MGI Sequence Detail	11417	C57BL/6J
transcript	ENSMUST00000222709	Ensembl | MGI Sequence Detail	415	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;