Gm47829 Pseudogene Detail

Summary

• Symbol
  Gm47829
• Name
  predicted gene, 47829

• Feature Type
  pseudogene
• IDs
  MGI:6097026
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:77935227-77935371 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097026	pseudogene	Chr9:77935227-77935371 (+)
129S1/SvImJ	ENSMUSG00200019880	pseudogene	Chr9:75085276-75085420 (+)
A/J	ENSMUSG00195011209	pseudogene	Chr9:74852652-74852796 (+)
AKR/J	ENSMUSG00220015362	pseudogene	Chr9:74985443-74985587 (+)
BALB/cJ	ENSMUSG00180018356	pseudogene	Chr9:74966192-74966336 (+)
C3H/HeJ	ENSMUSG00175011656	pseudogene	Chr9:74998667-74998811 (+)
C57BL/6NJ	ENSMUSG00215021855	pseudogene	Chr9:74894996-74895140 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009719	pseudogene	Chr9:74647600-74647744 (+)
CBA/J	ENSMUSG00210013259	pseudogene	Chr9:75051637-75051781 (+)
DBA/2J	ENSMUSG00185007417	pseudogene	Chr9:75086360-75086504 (+)
FVB/NJ	ENSMUSG00205028295	pseudogene	Chr9:75354805-75354949 (+)
JF1/MsJ	ENSUMUG00000038593	pseudogene	Chr9:75040338-75040482 (+)
LP/J	ENSMUSG00230025799	pseudogene	Chr9:75236893-75237037 (+)
NOD/ShiLtJ	ENSMUSG00190040011	pseudogene	Chr9:75188840-75188984 (+)
NZO/HlLtJ	ENSMUSG00225025623	pseudogene	Chr9:75384285-75384429 (+)
PWK/PhJ	ENSLUMG00010016014	pseudogene	Chr9:74964765-74964909 (+)
SPRET/EiJ	ENSMSPG00010004354	pseudogene	Chr9:76187841-76187985 (+)
WSB/EiJ	ENSIUOG00005027733	pseudogene	Chr9:74510603-74510747 (+)

Homology

• Gene Tree
  Gm47829
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000111850 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111850	Ensembl Gene Model | MGI Sequence Detail	145	C57BL/6J
transcript	ENSMUST00000216404	Ensembl | MGI Sequence Detail	145	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;