Gm47827 Gene Detail

Summary

• Symbol
  Gm47827
• Name
  predicted gene, 47827

• Feature Type
  lncRNA gene
• IDs
  MGI:6097022
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:112804158-112822230 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  676 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097022	lncRNA gene	Chr13:112804158-112822230 (-)
129S1/SvImJ	ENSMUSG00200032181	lncRNA gene	Chr13:107269960-107286511 (-)
A/J	ENSMUSG00195013644	lncRNA gene	Chr13:107769997-107786443 (-)
AKR/J	ENSMUSG00220031976	lncRNA gene	Chr13:106216419-106232964 (-)
BALB/cJ	ENSMUSG00180030632	lncRNA gene	Chr13:108366458-108383005 (-)
C3H/HeJ	ENSMUSG00175027925	lncRNA gene	Chr13:108444069-108460618 (-)
C57BL/6NJ	ENSMUSG00215023526	lncRNA gene	Chr13:108465795-108482350 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026181	lncRNA gene	Chr13:107489035-107505477 (-)
CBA/J	ENSMUSG00210010819	lncRNA gene	Chr13:107781712-107798259 (-)
DBA/2J	ENSMUSG00185030893	lncRNA gene	Chr13:111540265-111556816 (-)
FVB/NJ	ENSMUSG00205007402	lncRNA gene	Chr13:107215839-107232282 (-)
JF1/MsJ	ENSUMUG00000014279	lncRNA gene	Chr13:110997455-111013903 (-)
LP/J	ENSMUSG00230013171	lncRNA gene	Chr13:121738957-121755508 (-)
NOD/ShiLtJ	ENSMUSG00190019986	lncRNA gene	Chr13:108064823-108081377 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010010347	lncRNA gene	Chr13:107027811-107044248 (-)
SPRET/EiJ	ENSMSPG00010017210	lncRNA gene	Chr13:108708426-108724620 (-)
WSB/EiJ	ENSIUOG00005009610	lncRNA gene	Chr13:107236465-107253003 (-)

Homology

• Gene Tree
  Gm47827
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000114438 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114438	Ensembl Gene Model | MGI Sequence Detail	18073	C57BL/6J
transcript	ENSMUST00000326340	Ensembl | MGI Sequence Detail	1049	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm47827:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124074	Chr13:112809783-112809798 (-)	12,439 bp