Gm47820 Pseudogene Detail

Summary

• Symbol
  Gm47820
• Name
  predicted gene, 47820

• Feature Type
  pseudogene
• IDs
  MGI:6097010
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:85403358-85403951 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097010	pseudogene	Chr12:85403358-85403951 (+)
129S1/SvImJ	ENSMUSG00200051317	pseudogene	Chr12:77418507-77419100 (+)
A/J	ENSMUSG00195033770	pseudogene	Chr12:80038127-80038720 (+)
AKR/J	ENSMUSG00220049612	pseudogene	Chr12:77834050-77834643 (+)
BALB/cJ	ENSMUSG00180025862	pseudogene	Chr12:79075869-79076462 (+)
C3H/HeJ	ENSMUSG00175038277	pseudogene	Chr12:82168961-82169554 (+)
C57BL/6NJ	ENSMUSG00215045860	pseudogene	Chr12:78382344-78382937 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031749	pseudogene	Chr12:78348757-78349362 (+)
CBA/J	ENSMUSG00210046252	pseudogene	Chr12:78582148-78582741 (+)
DBA/2J	ENSMUSG00185002813	pseudogene	Chr12:80439390-80439983 (+)
FVB/NJ	ENSMUSG00205039419	pseudogene	Chr12:78250915-78251508 (+)
JF1/MsJ	ENSUMUG00000051702	pseudogene	Chr12:84430975-84431578 (+)
LP/J	ENSMUSG00230046972	pseudogene	Chr12:87501632-87502225 (+)
NOD/ShiLtJ	ENSMUSG00190048126	pseudogene	Chr12:77639188-77639781 (+)
NZO/HlLtJ	ENSMUSG00225053334	pseudogene	Chr12:89538727-89539320 (+)
PWK/PhJ	ENSLUMG00010031182	pseudogene	Chr12:78447370-78447971 (+)
SPRET/EiJ	ENSMSPG00010020155	pseudogene	Chr12:80266191-80266804 (+)
SPRET/EiJ	ENSMSPG00010049692	pseudogene	Chr1:164325510-164326087 (+)
WSB/EiJ	ENSIUOG00005045276	pseudogene	Chr12:78290488-78291081 (+)

Homology

• Gene Tree
  Gm47820
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000113072 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113072	Ensembl Gene Model | MGI Sequence Detail	594	C57BL/6J
transcript	ENSMUST00000220964	Ensembl | MGI Sequence Detail	594	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;