Gm47819 Gene Detail

Summary

• Symbol
  Gm47819
• Name
  predicted gene, 47819

• Feature Type
  lncRNA gene
• IDs
  MGI:6097008
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr12:85420777-85423468 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  169 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097008	lncRNA gene	Chr12:85420777-85423468 (+)
129S1/SvImJ	ENSMUSG00200050834	lncRNA gene	Chr12:77436040-77438555 (+)
A/J	ENSMUSG00195034668	lncRNA gene	Chr12:80055660-80058175 (+)
AKR/J	ENSMUSG00220049425	lncRNA gene	Chr12:77851588-77854103 (+)
BALB/cJ	ENSMUSG00180024680	lncRNA gene	Chr12:79093402-79095917 (+)
C3H/HeJ	ENSMUSG00175041662	lncRNA gene	Chr12:82186496-82189011 (+)
C57BL/6NJ	ENSMUSG00215047152	lncRNA gene	Chr12:78399879-78402394 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032651	lncRNA gene	Chr12:78367534-78370048 (+)
CBA/J	ENSMUSG00210046744	lncRNA gene	Chr12:78599684-78602199 (+)
DBA/2J	ENSMUSG00185002892	lncRNA gene	Chr12:80456924-80459439 (+)
FVB/NJ	ENSMUSG00205040355	lncRNA gene	Chr12:78268450-78270965 (+)
JF1/MsJ	ENSUMUG00000047922	lncRNA gene	Chr12:84449383-84451901 (+)
LP/J	ENSMUSG00230047059	lncRNA gene	Chr12:87519166-87521681 (+)
NOD/ShiLtJ	ENSMUSG00190048441	lncRNA gene	Chr12:77656722-77659233 (+)
NZO/HlLtJ	ENSMUSG00225053372	lncRNA gene	Chr12:89556261-89558776 (+)
PWK/PhJ	ENSLUMG00010028632	lncRNA gene	Chr12:78465757-78468272 (+)
SPRET/EiJ	ENSMSPG00010022107	lncRNA gene	Chr12:80284817-80287370 (+)
WSB/EiJ	ENSIUOG00005045632	lncRNA gene	Chr12:78308292-78310806 (+)

Homology

• Gene Tree
  Gm47819
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000113488 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113488	Ensembl Gene Model | MGI Sequence Detail	2692	C57BL/6J
transcript	ENSMUST00000354713	Ensembl | MGI Sequence Detail	1492	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm47819:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114386	Chr12:85420868-85420898 (+)	106 bp
Tssr114387	Chr12:85420899-85420910 (+)	128 bp
Tssr114388	Chr12:85421053-85421078 (+)	289 bp