Gm47815 Gene Detail

Summary

• Symbol
  Gm47815
• Name
  predicted gene, 47815

• Feature Type
  lncRNA gene
• IDs
  MGI:6097001
  NCBI Gene: 115487448
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:42910893-42925935 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  511 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6097001	lncRNA gene	Chr10:42910893-42926215 (+)
129S1/SvImJ	ENSMUSG00200009440	lncRNA gene	Chr10:39797838-39813104 (+)
A/J	ENSMUSG00195017837	lncRNA gene	Chr10:40073449-40088676 (+)
AKR/J	ENSMUSG00220030252	lncRNA gene	Chr10:39762673-39777901 (+)
BALB/cJ	ENSMUSG00180017542	lncRNA gene	Chr10:40157579-40172807 (+)
C3H/HeJ	ENSMUSG00175012444	lncRNA gene	Chr10:39952653-39967881 (+)
C57BL/6NJ	ENSMUSG00215010485	lncRNA gene	Chr10:39702007-39717236 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028392	lncRNA gene	Chr10:40150569-40165827 (+)
CBA/J	ENSMUSG00210025903	lncRNA gene	Chr10:39846174-39861404 (+)
DBA/2J	ENSMUSG00185007990	lncRNA gene	Chr10:39998758-40013988 (+)
FVB/NJ	ENSMUSG00205015306	lncRNA gene	Chr10:39914021-39929250 (+)
JF1/MsJ	ENSUMUG00000038191	lncRNA gene	Chr10:39802029-39817553 (+)
LP/J	ENSMUSG00230006397	lncRNA gene	Chr10:41787614-41802882 (+)
NOD/ShiLtJ	ENSMUSG00190032797	lncRNA gene	Chr10:40126820-40142048 (+)
NZO/HlLtJ	ENSMUSG00225019584	lncRNA gene	Chr10:46091684-46106912 (+)
PWK/PhJ	ENSLUMG00010008041	lncRNA gene	Chr10:39898332-39913847 (+)
SPRET/EiJ	ENSMSPG00010013769	lncRNA gene	Chr10:40937454-40953697 (+)
WSB/EiJ	ENSIUOG00005015745	lncRNA gene	Chr10:39671014-39686280 (+)

Homology

• Gene Tree
  Gm47815
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000111171 (Evidence)
• NCBI Gene
  115487448

Representative Sequences			Length	Strain/Species
genomic	115487448	NCBI Gene Model | MGI Sequence Detail	15043	C57BL/6J
transcript	XR_003948999	RefSeq | MGI Sequence Detail	1314	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;