Gm47805 Gene Detail

Summary

• Symbol
  Gm47805
• Name
  predicted gene, 47805

• Feature Type
  lncRNA gene
• IDs
  MGI:6096986
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:44775658-44778693 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  179 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096986	lncRNA gene	Chr13:44775658-44778693 (+)
129S1/SvImJ	ENSMUSG00200036832	lncRNA gene	Chr13:42031223-42034259 (+)
A/J	ENSMUSG00195030031	lncRNA gene	Chr13:41091263-41094299 (+)
AKR/J	ENSMUSG00220009852	lncRNA gene	Chr13:40891462-40894497 (+)
BALB/cJ	ENSMUSG00180008962	lncRNA gene	Chr13:41397881-41400917 (+)
C3H/HeJ	ENSMUSG00175030344	lncRNA gene	Chr13:41362210-41365248 (+)
C57BL/6NJ	ENSMUSG00215006787	lncRNA gene	Chr13:41519365-41522400 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032273	lncRNA gene	Chr13:41423207-41426251 (+)
CBA/J	ENSMUSG00210028784	lncRNA gene	Chr13:41367770-41370806 (+)
DBA/2J	ENSMUSG00185032757	lncRNA gene	Chr13:42174464-42177499 (+)
FVB/NJ	ENSMUSG00205013831	lncRNA gene	Chr13:41119586-41122623 (+)
JF1/MsJ	ENSUMUG00000016790	lncRNA gene	Chr13:41712392-41715427 (+)
LP/J	ENSMUSG00230030965	lncRNA gene	Chr13:51500089-51503125 (+)
NOD/ShiLtJ	ENSMUSG00190012423	lncRNA gene	Chr13:41573406-41576441 (+)
NZO/HlLtJ	ENSMUSG00225036516	lncRNA gene	Chr13:45268119-45271161 (+)
PWK/PhJ	ENSLUMG00010022149	lncRNA gene	Chr13:40555221-40558257 (+)
SPRET/EiJ	ENSMSPG00010031388	lncRNA gene	Chr13:40628080-40630980 (+)
WSB/EiJ	ENSIUOG00005027934	lncRNA gene	Chr13:40704331-40707372 (+)

Homology

• Gene Tree
  Gm47805
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000113730 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113730	Ensembl Gene Model | MGI Sequence Detail	3036	C57BL/6J
transcript	ENSMUST00000381677	Ensembl | MGI Sequence Detail	558	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;