Gm47802 Gene Detail

Summary

• Symbol
  Gm47802
• Name
  predicted gene, 47802

• Feature Type
  lncRNA gene
• IDs
  MGI:6096981
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:9783933-9788270 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  230 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096981	lncRNA gene	Chr13:9783933-9788270 (+)
129S1/SvImJ	ENSMUSG00200007107	lncRNA gene	Chr13:6958959-6963306 (+)
A/J	ENSMUSG00195013522	lncRNA gene	Chr13:6365341-6369678 (+)
AKR/J	ENSMUSG00220013497	lncRNA gene	Chr13:6608959-6613299 (+)
BALB/cJ	ENSMUSG00180009952	lncRNA gene	Chr13:6770861-6775199 (+)
C3H/HeJ	ENSMUSG00175008960	lncRNA gene	Chr13:6819531-6823868 (+)
C57BL/6NJ	ENSMUSG00215018599	lncRNA gene	Chr13:7072550-7076887 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026342	lncRNA gene	Chr13:6983411-6987768 (+)
CBA/J	ENSMUSG00210023187	lncRNA gene	Chr13:6347062-6351399 (+)
DBA/2J	ENSMUSG00185025202	lncRNA gene	Chr13:7035860-7040197 (+)
FVB/NJ	ENSMUSG00205027672	lncRNA gene	Chr13:6787324-6791661 (+)
JF1/MsJ	ENSUMUG00000010817	lncRNA gene	Chr13:7052399-7056742 (+)
LP/J	ENSMUSG00230008061	lncRNA gene	Chr13:16504869-16509208 (+)
NOD/ShiLtJ	ENSMUSG00190014287	lncRNA gene	Chr13:6465997-6470336 (+)
NZO/HlLtJ	ENSMUSG00225032840	lncRNA gene	Chr13:10409438-10413777 (+)
PWK/PhJ	ENSLUMG00010017497	lncRNA gene	Chr13:6426503-6430844 (+)
SPRET/EiJ	ENSMSPG00010026837	lncRNA gene	Chr13:6384009-6388505 (+)
WSB/EiJ	ENSIUOG00005023520	lncRNA gene	Chr13:6346317-6350663 (+)

Homology

• Gene Tree
  Gm47802
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000113885 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113885	Ensembl Gene Model | MGI Sequence Detail	4338	C57BL/6J
transcript	ENSMUST00000221766	Ensembl | MGI Sequence Detail	451	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;