Gm47781 Gene Detail

Summary

• Symbol
  Gm47781
• Name
  predicted gene, 47781

• Feature Type
  lncRNA gene
• IDs
  MGI:6096945
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:44385874-44393082 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  316 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096945	lncRNA gene	Chr13:44385874-44393082 (+)
129S1/SvImJ	ENSMUSG00200036702	lncRNA gene	Chr13:41652567-41659786 (+)
A/J	ENSMUSG00195031076	lncRNA gene	Chr13:40712534-40719751 (+)
AKR/J	ENSMUSG00220009341	lncRNA gene	Chr13:40501055-40508263 (+)
BALB/cJ	ENSMUSG00180008687	lncRNA gene	Chr13:41019196-41026415 (+)
C3H/HeJ	ENSMUSG00175030597	lncRNA gene	Chr13:40983572-40990787 (+)
C57BL/6NJ	ENSMUSG00215006419	lncRNA gene	Chr13:41128970-41136177 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032726	lncRNA gene	Chr13:41044091-41051330 (+)
CBA/J	ENSMUSG00210028840	lncRNA gene	Chr13:40989148-40996365 (+)
DBA/2J	ENSMUSG00185032335	lncRNA gene	Chr13:41784150-41791358 (+)
FVB/NJ	ENSMUSG00205012230	lncRNA gene	Chr13:40741050-40748261 (+)
JF1/MsJ	ENSUMUG00000016582	lncRNA gene	Chr13:41330610-41337922 (+)
LP/J	ENSMUSG00230030539	lncRNA gene	Chr13:51121474-51128689 (+)
NOD/ShiLtJ	ENSMUSG00190012115	lncRNA gene	Chr13:41183073-41190281 (+)
NZO/HlLtJ	ENSMUSG00225036334	lncRNA gene	Chr13:44889586-44896794 (+)
PWK/PhJ	ENSLUMG00010021046	lncRNA gene	Chr13:40176785-40184002 (+)
SPRET/EiJ	ENSMSPG00010011260	lncRNA gene	Chr13:40242231-40249344 (+)
WSB/EiJ	ENSIUOG00005027492	lncRNA gene	Chr13:40324205-40331411 (+)

Homology

• Gene Tree
  Gm47781
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000113727 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113727	Ensembl Gene Model | MGI Sequence Detail	7209	C57BL/6J
transcript	ENSMUST00000221767	Ensembl | MGI Sequence Detail	603	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;