Gm47774 Gene Detail

Summary

• Symbol
  Gm47774
• Name
  predicted gene, 47774

• Feature Type
  lncRNA gene
• IDs
  MGI:6096933
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr14:24418019-24428414 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  397 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096933	lncRNA gene	Chr14:24418019-24428414 (-)
129S1/SvImJ	ENSMUSG00200015468	lncRNA gene	Chr14:16238957-16240556 (-)
A/J	ENSMUSG00195022186	lncRNA gene	Chr14:17306896-17308495 (-)
AKR/J	ENSMUSG00220027758	lncRNA gene	Chr14:16406683-16408280 (-)
BALB/cJ	ENSMUSG00180041718	lncRNA gene	Chr14:16398851-16400450 (-)
C3H/HeJ	ENSMUSG00175024750	lncRNA gene	Chr14:16466632-16468231 (-)
C57BL/6NJ	ENSMUSG00215033398	lncRNA gene	Chr14:16705172-16706771 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032997	lncRNA gene	Chr14:16565197-16566783 (-)
CBA/J	ENSMUSG00210027909	lncRNA gene	Chr14:16701427-16703026 (-)
DBA/2J	ENSMUSG00185044246	lncRNA gene	Chr14:20986520-20988119 (-)
FVB/NJ	ENSMUSG00205039995	lncRNA gene	Chr14:16528333-16529932 (-)
JF1/MsJ	ENSUMUG00000049598	lncRNA gene	Chr14:28187582-28189126 (-)
LP/J	ENSMUSG00230040527	lncRNA gene	Chr14:28268016-28269615 (-)
NOD/ShiLtJ	ENSMUSG00190037996	lncRNA gene	Chr14:16704840-16706419 (-)
NZO/HlLtJ	ENSMUSG00225037562	lncRNA gene	Chr14:22491626-22493225 (-)
PWK/PhJ	ENSLUMG00010022257	lncRNA gene	Chr14:4837499-4839033 (-)
SPRET/EiJ	ENSMSPG00010032273	lncRNA gene	Chr14:18360308-18361868 (-)
WSB/EiJ	ENSIUOG00005034635	lncRNA gene	Chr14:16549941-16551506 (-)

Homology

• Gene Tree
  Gm47774
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000114567 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114567	Ensembl Gene Model | MGI Sequence Detail	10396	C57BL/6J
transcript	ENSMUST00000350083	Ensembl | MGI Sequence Detail	1629	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm47774:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr127748	Chr14:24419881-24419887 (-)	8,530 bp
Tssr127747	Chr14:24419869-24419876 (-)	8,541 bp
Tssr127746	Chr14:24419849-24419861 (-)	8,559 bp
Tssr127745	Chr14:24419488-24419493 (-)	8,923 bp