Gm47772 Gene Detail

Summary

• Symbol
  Gm47772
• Name
  predicted gene, 47772

• Feature Type
  lncRNA gene
• IDs
  MGI:6096930
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:24414732-24416881 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096930	lncRNA gene	Chr9:24414732-24416881 (+)
129S1/SvImJ	ENSMUSG00200008606	lncRNA gene	Chr9:21391598-21393734 (+)
A/J	ENSMUSG00195006435	lncRNA gene	Chr9:21207983-21210119 (+)
AKR/J	ENSMUSG00220011019	lncRNA gene	Chr9:21206906-21209042 (+)
BALB/cJ	ENSMUSG00180007254	lncRNA gene	Chr9:21342195-21344331 (+)
C3H/HeJ	ENSMUSG00175020104	lncRNA gene	Chr9:21318651-21320787 (+)
C57BL/6NJ	ENSMUSG00215009627	lncRNA gene	Chr9:21303961-21306097 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019255	lncRNA gene	Chr9:21314936-21317368 (+)
CBA/J	ENSMUSG00210022272	lncRNA gene	Chr9:21327788-21329924 (+)
DBA/2J	ENSMUSG00185002949	lncRNA gene	Chr9:21400830-21402966 (+)
FVB/NJ	ENSMUSG00205004870	lncRNA gene	Chr9:21657819-21659956 (+)
JF1/MsJ	ENSUMUG00000016068	lncRNA gene	Chr9:21511015-21513383 (+)
LP/J	ENSMUSG00230005451	lncRNA gene	Chr9:21800692-21802828 (+)
NOD/ShiLtJ	ENSMUSG00190006702	lncRNA gene	Chr9:21348319-21350455 (+)
NZO/HlLtJ	ENSMUSG00225015127	lncRNA gene	Chr9:21777956-21780092 (+)
PWK/PhJ	ENSLUMG00010010037	lncRNA gene	Chr9:21401089-21403438 (+)
SPRET/EiJ	ENSMSPG00010002172	lncRNA gene	Chr9:21652614-21655164 (+)
WSB/EiJ	ENSIUOG00005016057	lncRNA gene	Chr9:20871540-20873674 (+)

Homology

• Gene Tree
  Gm47772
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000111365 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111365	Ensembl Gene Model | MGI Sequence Detail	2150	C57BL/6J
transcript	ENSMUST00000246104	Ensembl | MGI Sequence Detail	1451	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm47772:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84114	Chr9:24414793-24414808 (+)	69 bp