Gm47767 Gene Detail

Summary

• Symbol
  Gm47767
• Name
  predicted gene, 47767

• Feature Type
  lncRNA gene
• IDs
  MGI:6096921
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:80255522-80258726 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  172 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096921	lncRNA gene	Chr12:80255522-80258726 (+)
129S1/SvImJ	ENSMUSG00200050506	lncRNA gene	Chr12:72225977-72228657 (+)
A/J	ENSMUSG00195033315	lncRNA gene	Chr12:74919487-74922157 (+)
AKR/J	ENSMUSG00220050143	lncRNA gene	Chr12:72708893-72711570 (+)
BALB/cJ	ENSMUSG00180026077	lncRNA gene	Chr12:73890157-73892829 (+)
C3H/HeJ	ENSMUSG00175045777	lncRNA gene	Chr12:77051733-77054403 (+)
C57BL/6NJ	ENSMUSG00215045905	lncRNA gene	Chr12:73255752-73258427 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034424	lncRNA gene	Chr12:73181407-73184100 (+)
CBA/J	ENSMUSG00210047928	lncRNA gene	Chr12:73465980-73468650 (+)
DBA/2J	ENSMUSG00185043441	lncRNA gene	Chr12:75326734-75329407 (+)
FVB/NJ	ENSMUSG00205040832	lncRNA gene	Chr12:73072585-73075293 (+)
JF1/MsJ	ENSUMUG00000023668	lncRNA gene	Chr12:79311654-79314332 (+)
LP/J	ENSMUSG00230046376	lncRNA gene	Chr12:82344094-82346775 (+)
NOD/ShiLtJ	ENSMUSG00190047416	lncRNA gene	Chr12:72529110-72531817 (+)
NZO/HlLtJ	ENSMUSG00225052142	lncRNA gene	Chr12:84397258-84399960 (+)
PWK/PhJ	ENSLUMG00010031353	lncRNA gene	Chr12:73330782-73333463 (+)
SPRET/EiJ	ENSMSPG00010021498	lncRNA gene	Chr12:75147424-75150063 (+)
WSB/EiJ	ENSIUOG00005044493	lncRNA gene	Chr12:73138756-73141430 (+)

Homology

• Gene Tree
  Gm47767
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000112852 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112852	Ensembl Gene Model | MGI Sequence Detail	3205	C57BL/6J
transcript	ENSMUST00000218235	Ensembl | MGI Sequence Detail	898	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm47767:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114134	Chr12:80256962-80256971 (+)	1,445 bp
Tssr114135	Chr12:80257915-80257922 (+)	2,397 bp