Gm47754 Gene Detail

Summary

• Symbol
  Gm47754
• Name
  predicted gene, 47754

• Feature Type
  lncRNA gene
• IDs
  MGI:6096900
  NCBI Gene: 115488147
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr13:37765051-37773289 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  362 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096900	lncRNA gene	Chr13:37765041-37773289 (+)
129S1/SvImJ	ENSMUSG00200012740	lncRNA gene	Chr13:34990254-34998531 (+)
A/J	ENSMUSG00195035430	lncRNA gene	Chr13:34067401-34075689 (+)
AKR/J	ENSMUSG00220034644	lncRNA gene	Chr13:33836880-33845161 (+)
BALB/cJ	ENSMUSG00180008585	lncRNA gene	Chr13:34373000-34381288 (+)
C3H/HeJ	ENSMUSG00175013296	lncRNA gene	Chr13:34325676-34333961 (+)
C57BL/6NJ	ENSMUSG00215017304	lncRNA gene	Chr13:34494823-34503057 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037417	lncRNA gene	Chr13:34425502-34433781 (+)
CBA/J	ENSMUSG00210011938	lncRNA gene	Chr13:34333402-34341687 (+)
DBA/2J	ENSMUSG00185035366	lncRNA gene	Chr13:35160043-35168279 (+)
FVB/NJ	ENSMUSG00205038820	lncRNA gene	Chr13:34028780-34037055 (+)
JF1/MsJ	ENSUMUG00000034341	lncRNA gene	Chr13:34719037-34727314 (+)
LP/J	ENSMUSG00230016515	lncRNA gene	Chr13:44476339-44484624 (+)
NOD/ShiLtJ	ENSMUSG00190012983	lncRNA gene	Chr13:34556096-34564332 (+)
NZO/HlLtJ	ENSMUSG00225035009	lncRNA gene	Chr13:38269555-38277836 (+)
PWK/PhJ	ENSLUMG00010030988	lncRNA gene	Chr13:33549032-33557272 (+)
SPRET/EiJ	ENSMSPG00010011083	lncRNA gene	Chr13:33564031-33572375 (+)
WSB/EiJ	ENSIUOG00005029129	lncRNA gene	Chr13:33694368-33702652 (+)

Homology

• Gene Tree
  Gm47754
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000114784 (Evidence)
• NCBI Gene
  115488147

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114784	Ensembl Gene Model | MGI Sequence Detail	8239	C57BL/6J
transcript	ENSMUST00000250095	Ensembl | MGI Sequence Detail	473	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm47754:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119298	Chr13:37765034-37765086 (+)	9 bp
Tssr119299	Chr13:37765092-37765120 (+)	55 bp
Tssr119300	Chr13:37765184-37765194 (+)	138 bp