Gm47746 Pseudogene Detail

Summary

• Symbol
  Gm47746
• Name
  predicted gene, 47746

• Feature Type
  pseudogene
• IDs
  MGI:6096890
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:85288839-85289221 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  178 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096890	pseudogene	Chr13:85288839-85289221 (+)
129S1/SvImJ	ENSMUSG00200006485	pseudogene	Chr13:79749329-79749711 (+)
A/J	ENSMUSG00195025710	pseudogene	Chr13:80286206-80286588 (+)
AKR/J	ENSMUSG00220016864	pseudogene	Chr13:78763371-78763753 (+)
BALB/cJ	ENSMUSG00180016492	pseudogene	Chr13:80767671-80768053 (+)
C3H/HeJ	ENSMUSG00175023948	pseudogene	Chr13:80964675-80965057 (+)
C57BL/6NJ	ENSMUSG00215003082	pseudogene	Chr13:80869848-80870230 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004204	pseudogene	Chr13:80177367-80177749 (+)
CBA/J	ENSMUSG00210005744	pseudogene	Chr13:80249378-80249760 (+)
DBA/2J	ENSMUSG00185010092	pseudogene	Chr13:83941195-83941577 (+)
FVB/NJ	ENSMUSG00205014795	pseudogene	Chr13:79707348-79707730 (+)
JF1/MsJ	ENSUMUG00000021477	pseudogene	Chr13:83710066-83710447 (+)
LP/J	ENSMUSG00230004676	pseudogene	Chr13:93957318-93957700 (+)
NOD/ShiLtJ	ENSMUSG00190019325	pseudogene	Chr13:80584611-80584993 (+)
NZO/HlLtJ	ENSMUSG00225030999	pseudogene	Chr13:86474502-86474884 (+)
PWK/PhJ	ENSLUMG00010014611	pseudogene	Chr13:79852484-79852865 (+)
SPRET/EiJ	ENSMSPG00010006853	pseudogene	Chr13:80926048-80926430 (+)
WSB/EiJ	ENSIUOG00005017983	pseudogene	Chr13:79600193-79600575 (+)

Homology

• Gene Tree
  Gm47746
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000114954 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114954	Ensembl Gene Model | MGI Sequence Detail	383	C57BL/6J
transcript	ENSMUST00000224780	Ensembl | MGI Sequence Detail	383	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;