Gm47739 Gene Detail

Summary

• Symbol
  Gm47739
• Name
  predicted gene, 47739

• Feature Type
  lncRNA gene
• IDs
  MGI:6096881
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:53446721-53451852 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  70 from dbSNP Build 142
• Strain Annotations
  32

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096881	lncRNA gene	Chr10:53446721-53451852 (-)
129S1/SvImJ	ENSMUSG00200022733	lncRNA gene	Chr11:20515926-20521057 (-)
129S1/SvImJ	ENSMUSG00200029308	lncRNA gene	Chr10:50344060-50349191 (-)
129S1/SvImJ	ENSMUSG00200038634	lncRNA gene	ChrX:31721922-31727014 (+)
A/J	ENSMUSG00195028858	lncRNA gene	Chr10:50612041-50617172 (-)
A/J	ENSMUSG00195018784	lncRNA gene	ChrX:34323583-34328675 (+)
A/J	ENSMUSG00195005738	lncRNA gene	Chr11:20362993-20368124 (-)
AKR/J	ENSMUSG00220041583	lncRNA gene	ChrX:31211987-31217079 (+)
AKR/J	ENSMUSG00220004193	lncRNA gene	Chr11:20452276-20457407 (-)
AKR/J	ENSMUSG00220013568	lncRNA gene	Chr13:21690843-21695974 (-)
AKR/J	ENSMUSG00220006905	lncRNA gene	Chr10:50303161-50308292 (-)
BALB/cJ	ENSMUSG00180036861	lncRNA gene	ChrX:32053480-32058572 (+)
BALB/cJ	ENSMUSG00180029184	lncRNA gene	Chr10:50741660-50746791 (-)
C3H/HeJ	ENSMUSG00175027550	lncRNA gene	Chr10:50484568-50489699 (-)
C3H/HeJ	ENSMUSG00175045329	lncRNA gene	ChrX:35072101-35077193 (+)
C57BL/6NJ	ENSMUSG00215029846	lncRNA gene	Chr10:50246760-50251891 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210043609	lncRNA gene	ChrX:32315628-32320720 (+)
CBA/J	ENSMUSG00210039502	lncRNA gene	Chr10:50390378-50395509 (-)
DBA/2J	ENSMUSG00185042099	lncRNA gene	Chr10:50542119-50547250 (-)
DBA/2J	ENSMUSG00185035435	lncRNA gene	ChrX:43022013-43027105 (+)
DBA/2J	ENSMUSG00185024941	lncRNA gene	ChrX:117860404-117865535 (-)
FVB/NJ	ENSMUSG00205035488	lncRNA gene	ChrX:31001291-31006383 (+)
FVB/NJ	ENSMUSG00205005518	lncRNA gene	Chr11:20416574-20421705 (-)
FVB/NJ	ENSMUSG00205005535	lncRNA gene	Chr10:50476271-50481402 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230004243	lncRNA gene	ChrX:124553819-124558950 (-)
LP/J	ENSMUSG00230023849	lncRNA gene	Chr10:52343522-52348653 (-)
LP/J	ENSMUSG00230020588	lncRNA gene	ChrX:49554341-49559433 (+)
NOD/ShiLtJ	ENSMUSG00190041261	lncRNA gene	ChrX:31491253-31496345 (+)
NOD/ShiLtJ	ENSMUSG00190005576	lncRNA gene	Chr10:50708856-50713987 (-)
NZO/HlLtJ	ENSMUSG00225022736	lncRNA gene	Chr10:56624430-56629561 (-)
NZO/HlLtJ	ENSMUSG00225034044	lncRNA gene	ChrX:129287240-129292371 (-)
NZO/HlLtJ	ENSMUSG00225044081	lncRNA gene	ChrX:54748007-54753099 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm47739
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34

• Ensembl
  ENSMUSG00000112731 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112731	Ensembl Gene Model | MGI Sequence Detail	5132	C57BL/6J
transcript	ENSMUST00000219731	Ensembl | MGI Sequence Detail	2705	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;