Gm47738 Gene Detail

Summary

• Symbol
  Gm47738
• Name
  predicted gene, 47738

• Feature Type
  lncRNA gene
• IDs
  MGI:6096879
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:53445765-53447678 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  50 from dbSNP Build 142
• Strain Annotations
  40

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096879	lncRNA gene	Chr10:53445765-53447678 (+)
129S1/SvImJ	ENSMUSG00200038643	lncRNA gene	ChrX:31726057-31727970 (-)
129S1/SvImJ	ENSMUSG00200022728	lncRNA gene	Chr11:20514970-20516883 (+)
129S1/SvImJ	ENSMUSG00200029288	lncRNA gene	Chr10:50343104-50345017 (+)
A/J	ENSMUSG00195018810	lncRNA gene	ChrX:34327718-34329631 (-)
A/J	ENSMUSG00195005726	lncRNA gene	Chr11:20362037-20363950 (+)
A/J	ENSMUSG00195028840	lncRNA gene	Chr10:50611085-50612998 (+)
AKR/J	ENSMUSG00220004185	lncRNA gene	Chr11:20451320-20453233 (+)
AKR/J	ENSMUSG00220013565	lncRNA gene	Chr13:21689887-21691800 (+)
AKR/J	ENSMUSG00220041644	lncRNA gene	ChrX:31216122-31218035 (-)
AKR/J	ENSMUSG00220006900	lncRNA gene	Chr10:50302205-50304118 (+)
BALB/cJ	ENSMUSG00180036881	lncRNA gene	ChrX:32057615-32059528 (-)
BALB/cJ	ENSMUSG00180029174	lncRNA gene	Chr10:50740704-50742617 (+)
C3H/HeJ	ENSMUSG00175027513	lncRNA gene	Chr10:50483612-50485525 (+)
C3H/HeJ	ENSMUSG00175045351	lncRNA gene	ChrX:35076236-35078149 (-)
C57BL/6NJ	ENSMUSG00215029802	lncRNA gene	Chr10:50245804-50247717 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210043636	lncRNA gene	ChrX:32319763-32321676 (-)
CBA/J	ENSMUSG00210039475	lncRNA gene	Chr10:50389422-50391335 (+)
DBA/2J	ENSMUSG00185035451	lncRNA gene	ChrX:43026148-43028061 (-)
DBA/2J	ENSMUSG00185024927	lncRNA gene	ChrX:117859447-117861361 (+)
DBA/2J	ENSMUSG00185042075	lncRNA gene	Chr10:50541163-50543076 (+)
FVB/NJ	ENSMUSG00205005514	lncRNA gene	Chr11:20415618-20417531 (+)
FVB/NJ	ENSMUSG00205005533	lncRNA gene	Chr10:50475315-50477228 (+)
FVB/NJ	ENSMUSG00205035576	lncRNA gene	ChrX:31005426-31007339 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230004242	lncRNA gene	ChrX:124552862-124554776 (+)
LP/J	ENSMUSG00230023611	lncRNA gene	Chr10:52342566-52344479 (+)
LP/J	ENSMUSG00230019521	lncRNA gene	Chr10:82383123-82385036 (-)
LP/J	ENSMUSG00230009414	lncRNA gene	Chr1:114243561-114263022 (-)
LP/J	ENSMUSG00230020594	lncRNA gene	ChrX:49558476-49560389 (-)
NOD/ShiLtJ	ENSMUSG00190005574	lncRNA gene	Chr10:50707900-50709813 (+)
NOD/ShiLtJ	ENSMUSG00190041350	lncRNA gene	ChrX:31495388-31497301 (-)
NZO/HlLtJ	ENSMUSG00225000287	lncRNA gene	Chr1:5984955-5986869 (+)
NZO/HlLtJ	ENSMUSG00225004009	lncRNA gene	Chr2:90425178-90427144 (+)
NZO/HlLtJ	ENSMUSG00225040351	lncRNA gene	Chr11:72655158-72657063 (-)
NZO/HlLtJ	ENSMUSG00225053886	lncRNA gene	Chr10:86669784-86671697 (-)
NZO/HlLtJ	ENSMUSG00225003020	lncRNA gene	Chr1:118160202-118179667 (-)
NZO/HlLtJ	ENSMUSG00225034034	lncRNA gene	ChrX:129286283-129288197 (+)
NZO/HlLtJ	ENSMUSG00225022666	lncRNA gene	Chr10:56623474-56625387 (+)
NZO/HlLtJ	ENSMUSG00225044102	lncRNA gene	ChrX:54752142-54754055 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005042911	lncRNA gene	Chr10:50350611-50351054 (+)

Homology

• Gene Tree
  Gm47738
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42

• Ensembl
  ENSMUSG00000112530 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112530	Ensembl Gene Model | MGI Sequence Detail	1914	C57BL/6J
transcript	ENSMUST00000218795	Ensembl | MGI Sequence Detail	1861	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;