Gm47735 Gene Detail

Summary

• Symbol
  Gm47735
• Name
  predicted gene, 47735

• Feature Type
  lncRNA gene
• IDs
  MGI:6096874
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:36325014-36325698 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096874	lncRNA gene	Chr19:36325014-36325698 (-)
129S1/SvImJ	ENSMUSG00200031962	lncRNA gene	Chr19:33094547-33095231 (-)
A/J	ENSMUSG00195011773	lncRNA gene	Chr19:33215487-33216171 (-)
AKR/J	ENSMUSG00220019165	lncRNA gene	Chr19:33099363-33100047 (-)
BALB/cJ	ENSMUSG00180032750	lncRNA gene	Chr19:33544262-33544946 (-)
C3H/HeJ	ENSMUSG00175041505	lncRNA gene	Chr19:32971526-32972210 (-)
C57BL/6NJ	ENSMUSG00215034149	lncRNA gene	Chr19:32989384-32990068 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015842	lncRNA gene	Chr19:32632676-32633360 (-)
CBA/J	ENSMUSG00210037748	lncRNA gene	Chr19:33050830-33051514 (-)
DBA/2J	ENSMUSG00185034536	lncRNA gene	Chr19:33570994-33571678 (-)
FVB/NJ	ENSMUSG00205007996	lncRNA gene	Chr19:32823213-32823897 (-)
JF1/MsJ	ENSUMUG00000050197	lncRNA gene	Chr19:33702001-33702685 (-)
LP/J	ENSMUSG00230036243	lncRNA gene	Chr19:34381933-34382617 (-)
NOD/ShiLtJ	ENSMUSG00190011967	lncRNA gene	Chr19:32954852-32955536 (-)
NZO/HlLtJ	ENSMUSG00225029557	lncRNA gene	Chr19:37938687-37939371 (-)
PWK/PhJ	ENSLUMG00010001456	lncRNA gene	Chr19:33082130-33082814 (-)
SPRET/EiJ	ENSMSPG00010025221	lncRNA gene	Chr19:32804670-32805354 (-)
WSB/EiJ	ENSIUOG00005038174	lncRNA gene	Chr19:32465960-32466644 (-)

Homology

• Gene Tree
  Gm47735
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000114859 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114859	Ensembl Gene Model | MGI Sequence Detail	685	C57BL/6J
transcript	ENSMUST00000225679	Ensembl | MGI Sequence Detail	685	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm47735:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr159044	Chr19:36326801-36326817 (-)	-1,111 bp
Tssr159043	Chr19:36326687-36326719 (-)	-1,005 bp