Gm47729 Gene Detail

Summary

• Symbol
  Gm47729
• Name
  predicted gene, 47729

• Feature Type
  lncRNA gene
• IDs
  MGI:6096862
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:16459911-16520858 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1628 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096862	lncRNA gene	Chr10:16459911-16520858 (+)
129S1/SvImJ	ENSMUSG00200010686	lncRNA gene	Chr10:13460219-13520439 (+)
A/J	ENSMUSG00195006840	lncRNA gene	Chr10:13439790-13500040 (+)
AKR/J	ENSMUSG00220010231	lncRNA gene	Chr10:13389286-13449624 (+)
BALB/cJ	ENSMUSG00180016063	lncRNA gene	Chr10:13570798-13631054 (+)
C3H/HeJ	ENSMUSG00175020980	lncRNA gene	Chr10:13587659-13647907 (+)
C57BL/6NJ	ENSMUSG00215004000	lncRNA gene	Chr10:13410830-13471126 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031847	lncRNA gene	Chr10:13380223-13440566 (+)
CBA/J	ENSMUSG00210015887	lncRNA gene	Chr10:13519357-13579602 (+)
DBA/2J	ENSMUSG00185007587	lncRNA gene	Chr10:13512856-13573106 (+)
FVB/NJ	ENSMUSG00205018491	lncRNA gene	Chr10:13438774-13499060 (+)
JF1/MsJ	ENSUMUG00000014506	lncRNA gene	Chr10:13603554-13663815 (+)
LP/J	ENSMUSG00230018924	lncRNA gene	Chr10:15169457-15229701 (+)
NOD/ShiLtJ	ENSMUSG00190011204	lncRNA gene	Chr10:13524061-13584381 (+)
NZO/HlLtJ	ENSMUSG00225016295	lncRNA gene	Chr10:19679188-19739408 (+)
PWK/PhJ	ENSLUMG00010015601	lncRNA gene	Chr10:13328098-13393938 (+)
SPRET/EiJ	ENSMSPG00010011524	lncRNA gene	Chr10:13842609-13917194 (+)
WSB/EiJ	ENSIUOG00005023068	lncRNA gene	Chr10:13134743-13195022 (+)

Homology

• Gene Tree
  Gm47729
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000112929 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112929	Ensembl Gene Model | MGI Sequence Detail	60948	C57BL/6J
transcript	ENSMUST00000285008	Ensembl | MGI Sequence Detail	1565	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm47729:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92440	Chr10:16459984-16459995 (+)	79 bp