Gm47707 Gene Detail

Summary

• Symbol
  Gm47707
• Name
  predicted gene, 47707

• Feature Type
  lncRNA gene
• IDs
  MGI:6096825
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:37339894-37342194 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  159 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096825	lncRNA gene	Chr13:37339894-37342194 (+)
129S1/SvImJ	ENSMUSG00200013911	lncRNA gene	Chr13:34543553-34545290 (+)
A/J	ENSMUSG00195034341	lncRNA gene	Chr13:33632176-33633913 (+)
AKR/J	ENSMUSG00220035145	lncRNA gene	Chr13:33427067-33428810 (+)
BALB/cJ	ENSMUSG00180008225	lncRNA gene	Chr13:33937766-33939509 (+)
C3H/HeJ	ENSMUSG00175015256	lncRNA gene	Chr13:33891965-33892315 (+)
C3H/HeJ	ENSMUSG00175015080	lncRNA gene	Chr13:33884947-33886690 (+)
C3H/HeJ	ENSMUSG00175009529	lncRNA gene	ChrX:47923214-47923564 (+)
C3H/HeJ	ENSMUSG00175018997	lncRNA gene	Chr2:7556312-7558036 (-)
C57BL/6NJ	ENSMUSG00215015391	lncRNA gene	Chr13:34065407-34067144 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038236	lncRNA gene	Chr13:34005933-34007694 (+)
CBA/J	ENSMUSG00210011993	lncRNA gene	Chr13:33898154-33899897 (+)
DBA/2J	ENSMUSG00185034749	lncRNA gene	Chr13:34727865-34729605 (+)
FVB/NJ	ENSMUSG00205032081	lncRNA gene	Chr13:33595738-33597469 (+)
JF1/MsJ	ENSUMUG00000038433	lncRNA gene	Chr13:34305965-34307708 (+)
LP/J	ENSMUSG00230016641	lncRNA gene	Chr13:44041170-44042913 (+)
NOD/ShiLtJ	ENSMUSG00190012084	lncRNA gene	Chr13:34116556-34118296 (+)
NZO/HlLtJ	ENSMUSG00225035084	lncRNA gene	Chr13:37847427-37849173 (+)
PWK/PhJ	ENSLUMG00010029092	lncRNA gene	Chr13:33142442-33144178 (+)
SPRET/EiJ	ENSMSPG00010011341	lncRNA gene	Chr13:33139141-33140894 (+)
WSB/EiJ	ENSIUOG00005028385	lncRNA gene	Chr13:33267178-33268909 (+)

Homology

• Gene Tree
  Gm47707
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000114428 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114428	Ensembl Gene Model | MGI Sequence Detail	2301	C57BL/6J
transcript	ENSMUST00000225257	Ensembl | MGI Sequence Detail	946	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;