Gm47680 Gene Detail

Summary

• Symbol
  Gm47680
• Name
  predicted gene, 47680

• Feature Type
  lncRNA gene
• IDs
  MGI:6096780
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr9:32505233-32540853 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1377 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096780	lncRNA gene	Chr9:32505233-32540853 (+)
129S1/SvImJ	ENSMUSG00200008675	lncRNA gene	Chr9:29546706-29562783 (+)
A/J	ENSMUSG00195006241	lncRNA gene	Chr9:29337893-29353970 (+)
AKR/J	ENSMUSG00220010842	lncRNA gene	Chr9:29367681-29383758 (+)
BALB/cJ	ENSMUSG00180006905	lncRNA gene	Chr9:29466264-29482341 (+)
C3H/HeJ	ENSMUSG00175020220	lncRNA gene	Chr9:29452062-29468135 (+)
C57BL/6NJ	ENSMUSG00215008138	lncRNA gene	Chr9:29422756-29438861 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019016	lncRNA gene	Chr9:29419842-29435944 (+)
CBA/J	ENSMUSG00210022170	lncRNA gene	Chr9:29471782-29487873 (+)
DBA/2J	ENSMUSG00185002759	lncRNA gene	Chr9:29521725-29537742 (+)
FVB/NJ	ENSMUSG00205004941	lncRNA gene	Chr9:29825426-29841521 (+)
JF1/MsJ	ENSUMUG00000015221	lncRNA gene	Chr9:29710684-29726701 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190006304	lncRNA gene	Chr9:29558352-29574423 (+)
NZO/HlLtJ	ENSMUSG00225014898	lncRNA gene	Chr9:29934890-29950973 (+)
PWK/PhJ	ENSLUMG00010009429	lncRNA gene	Chr9:29566269-29582339 (+)
SPRET/EiJ	ENSMSPG00010002249	lncRNA gene	Chr9:29937723-29954812 (+)
WSB/EiJ	ENSIUOG00005015752	lncRNA gene	Chr9:28999940-29016053 (+)

Homology

• Gene Tree
  Gm47680
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42

• Ensembl
  ENSMUSG00000110844 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110844	Ensembl Gene Model | MGI Sequence Detail	35621	C57BL/6J
transcript	ENSMUST00000262476	Ensembl | MGI Sequence Detail	1651	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm47680:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84261	Chr9:32527558-32527586 (+)	22,339 bp
Tssr84262	Chr9:32528986-32529007 (+)	23,764 bp
Tssr2818	Chr9:32532242-32532245 (+)	27,011 bp