Gm47679 Pseudogene Detail

Summary

• Symbol
  Gm47679
• Name
  predicted gene, 47679

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:6096779
  NCBI Gene: 115487433
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:5685819-5686938 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096779	pseudogene	Chr10:5682991-5686941 (+)
129S1/SvImJ	ENSMUSG00200010385	pseudogene	Chr10:2652199-2653318 (+)
A/J	ENSMUSG00195010471	pseudogene	Chr10:2622836-2623955 (+)
AKR/J	ENSMUSG00220007612	pseudogene	Chr10:2672112-2673231 (+)
BALB/cJ	ENSMUSG00180023971	pseudogene	Chr10:2716995-2718114 (+)
C3H/HeJ	ENSMUSG00175013699	pseudogene	Chr10:2681993-2683128 (+)
C57BL/6NJ	ENSMUSG00215005279	pseudogene	Chr10:2622042-2623161 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018017	pseudogene	Chr10:2668942-2670061 (+)
CBA/J	ENSMUSG00210012663	pseudogene	Chr10:2634817-2635952 (+)
DBA/2J	ENSMUSG00185011065	pseudogene	Chr10:2688351-2689486 (+)
FVB/NJ	ENSMUSG00205008651	pseudogene	Chr10:2679938-2681073 (+)
JF1/MsJ	ENSUMUG00000039027	pseudogene	Chr10:2803377-2804512 (+)
LP/J	ENSMUSG00230017268	pseudogene	Chr10:4316144-4317263 (+)
NOD/ShiLtJ	ENSMUSG00190026971	pseudogene	Chr10:2628210-2629345 (+)
NZO/HlLtJ	ENSMUSG00225013771	pseudogene	Chr10:8820708-8821843 (+)
PWK/PhJ	ENSLUMG00010020977	pseudogene	Chr10:2652988-2654123 (+)
SPRET/EiJ	ENSMSPG00010007137	pseudogene	Chr10:2881241-2881294 (+)
WSB/EiJ	ENSIUOG00005014417	pseudogene	Chr10:2686400-2687519 (+)

Homology

• Gene Tree
  Gm47679
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000110983 (Evidence)
• NCBI Gene
  115487433

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110983	Ensembl Gene Model | MGI Sequence Detail	1120	C57BL/6J
transcript	ENSMUST00000213369	Ensembl | MGI Sequence Detail	213	Not Applicable
polypeptide	XP_030101284	RefSeq | MGI Sequence Detail	91	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;