Gm47672 Pseudogene Detail

Summary

• Symbol
  Gm47672
• Name
  predicted gene, 47672

• Feature Type
  pseudogene
• IDs
  MGI:6096767
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:105101455-105101700 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  162 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096767	pseudogene	Chr12:105101455-105101700 (+)
129S1/SvImJ	ENSMUSG00200029290	pseudogene	Chr12:96868230-96868475 (+)
A/J	ENSMUSG00195022734	pseudogene	Chr12:99430204-99430449 (+)
AKR/J	ENSMUSG00220044172	pseudogene	Chr12:97307626-97307871 (+)
BALB/cJ	ENSMUSG00180038902	pseudogene	Chr12:98613825-98614070 (+)
C3H/HeJ	ENSMUSG00175035235	pseudogene	Chr12:101242348-101242591 (+)
C57BL/6NJ	ENSMUSG00215042320	pseudogene	Chr12:97904108-97904353 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020601	pseudogene	Chr12:97369429-97369674 (+)
CBA/J	ENSMUSG00210015210	pseudogene	Chr12:98309624-98309869 (+)
DBA/2J	ENSMUSG00185047721	pseudogene	Chr12:100075490-100075735 (+)
FVB/NJ	ENSMUSG00205021560	pseudogene	Chr12:97299462-97299707 (+)
JF1/MsJ	ENSUMUG00000035074	pseudogene	Chr12:104825215-104825460 (+)
LP/J	ENSMUSG00230032690	pseudogene	Chr12:107133538-107133783 (+)
NOD/ShiLtJ	ENSMUSG00190031072	pseudogene	Chr12:87905483-87905728 (-)
NZO/HlLtJ	ENSMUSG00225038642	pseudogene	Chr12:108868990-108869235 (+)
PWK/PhJ	ENSLUMG00010014356	pseudogene	Chr12:98267767-98268012 (+)
SPRET/EiJ	ENSMSPG00010020780	pseudogene	Chr12:100635361-100635606 (+)
WSB/EiJ	ENSIUOG00005009639	pseudogene	Chr12:97311704-97311949 (+)

Homology

• Gene Tree
  Gm47672
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000113051 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113051	Ensembl Gene Model | MGI Sequence Detail	246	C57BL/6J
transcript	ENSMUST00000222354	Ensembl | MGI Sequence Detail	246	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;