Gm47667 Gene Detail

Summary

• Symbol
  Gm47667
• Name
  predicted gene, 47667

• Feature Type
  lncRNA gene
• IDs
  MGI:6096760
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:95470321-95475596 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  272 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096760	lncRNA gene	Chr10:95470321-95475596 (+)
129S1/SvImJ	ENSMUSG00200020700	lncRNA gene	Chr10:91985886-91987828 (+)
A/J	ENSMUSG00195016992	lncRNA gene	Chr10:92412025-92413967 (+)
AKR/J	ENSMUSG00220027084	lncRNA gene	Chr10:91973754-91975696 (+)
BALB/cJ	ENSMUSG00180010132	lncRNA gene	Chr10:92420140-92422082 (+)
C3H/HeJ	ENSMUSG00175006171	lncRNA gene	Chr10:92319158-92321100 (+)
C57BL/6NJ	ENSMUSG00215006541	lncRNA gene	Chr10:92001611-92003553 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035892	lncRNA gene	Chr10:91693029-91694946 (+)
CBA/J	ENSMUSG00210023186	lncRNA gene	Chr10:92150296-92152238 (+)
DBA/2J	ENSMUSG00185042969	lncRNA gene	Chr10:92362263-92364205 (+)
FVB/NJ	ENSMUSG00205022558	lncRNA gene	Chr10:92067969-92069915 (+)
JF1/MsJ	ENSUMUG00000033164	lncRNA gene	Chr10:93799452-93801378 (+)
LP/J	ENSMUSG00230021956	lncRNA gene	Chr10:94274529-94276471 (+)
NOD/ShiLtJ	ENSMUSG00190018387	lncRNA gene	Chr10:92399466-92401408 (+)
NZO/HlLtJ	ENSMUSG00225021831	lncRNA gene	Chr10:98518051-98519999 (+)
PWK/PhJ	ENSLUMG00010005699	lncRNA gene	Chr10:92042708-92044632 (+)
SPRET/EiJ	ENSMSPG00010010525	lncRNA gene	Chr10:93695894-93697800 (+)
WSB/EiJ	ENSIUOG00005013710	lncRNA gene	Chr10:92103612-92105552 (+)

Homology

• Gene Tree
  Gm47667
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000112538 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112538	Ensembl Gene Model | MGI Sequence Detail	5276	C57BL/6J
transcript	ENSMUST00000381178	Ensembl | MGI Sequence Detail	844	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm47667:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95371	Chr10:95470356-95470394 (+)	54 bp