Gm47647 Pseudogene Detail

Summary

• Symbol
  Gm47647
• Name
  predicted gene, 47647

• Feature Type
  pseudogene
• IDs
  MGI:6096728
  NCBI Gene: 115487978
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:58970420-58971080 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096728	pseudogene	Chr12:58970420-58971080 (-)
129S1/SvImJ	ENSMUSG00200004574	pseudogene	Chr12:50866638-50867903 (-)
A/J	ENSMUSG00195001722	pseudogene	Chr12:53514691-53515956 (-)
AKR/J	ENSMUSG00220015726	pseudogene	Chr12:51527212-51528477 (-)
BALB/cJ	ENSMUSG00180007555	pseudogene	Chr12:52531256-52532521 (-)
C3H/HeJ	ENSMUSG00175017550	pseudogene	Chr12:55567963-55569228 (-)
C57BL/6NJ	ENSMUSG00215010002	pseudogene	Chr12:51839336-51840601 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012356	pseudogene	Chr12:51899051-51900327 (-)
CBA/J	ENSMUSG00210014281	pseudogene	Chr12:52039032-52040297 (-)
DBA/2J	ENSMUSG00185001430	pseudogene	Chr12:53984298-53985563 (-)
FVB/NJ	ENSMUSG00205005683	pseudogene	Chr12:51820306-51821571 (-)
JF1/MsJ	ENSUMUG00000007927	pseudogene	Chr12:58004919-58006194 (-)
LP/J	ENSMUSG00230016101	pseudogene	Chr12:60992222-60993487 (-)
NOD/ShiLtJ	ENSMUSG00190016254	pseudogene	Chr12:51017981-51019246 (-)
NZO/HlLtJ	ENSMUSG00225029659	pseudogene	Chr12:63137479-63138744 (-)
PWK/PhJ	ENSLUMG00010002723	pseudogene	Chr12:52062276-52063551 (-)
SPRET/EiJ	ENSMSPG00010011437	pseudogene	Chr12:53610585-53611852 (-)
WSB/EiJ	ENSIUOG00005001060	pseudogene	Chr12:51855440-51856705 (-)

Homology

• Gene Tree
  Gm47647
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000112649 (Evidence)
• NCBI Gene
  115487978

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112649	Ensembl Gene Model | MGI Sequence Detail	661	C57BL/6J
transcript	ENSMUST00000218395	Ensembl | MGI Sequence Detail	661	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;