Gm47612 Pseudogene Detail

Summary

• Symbol
  Gm47612
• Name
  predicted gene, 47612

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:6096672
  NCBI Gene: 118567781
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:52404615-52405119 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  37 from dbSNP Build 142
• Strain Annotations
  126

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096672	pseudogene	Chr10:52404301-52406210 (+)
129S1/SvImJ	ENSMUSG00200008388	pseudogene	Chr8:50769732-50770236 (+)
129S1/SvImJ	ENSMUSG00200008417	pseudogene	Chr8:50782951-50783455 (+)
129S1/SvImJ	ENSMUSG00200008380	pseudogene	Chr8:50766429-50766933 (+)
129S1/SvImJ	ENSMUSG00200008410	pseudogene	Chr8:50779651-50780155 (+)
129S1/SvImJ	ENSMUSG00200008401	pseudogene	Chr8:50776346-50776850 (+)
129S1/SvImJ	ENSMUSG00200008364	pseudogene	Chr8:50759765-50760269 (+)
129S1/SvImJ	ENSMUSG00200008357	pseudogene	Chr8:50654125-50654627 (+)
129S1/SvImJ	ENSMUSG00200007474	pseudogene	Chr10:49301700-49302204 (+)
129S1/SvImJ	ENSMUSG00200008394	pseudogene	Chr8:50773030-50773534 (+)
129S1/SvImJ	ENSMUSG00200008371	pseudogene	Chr8:50763126-50763630 (+)
A/J	ENSMUSG00195012882	pseudogene	Chr8:51157766-51158270 (+)
A/J	ENSMUSG00195012889	pseudogene	Chr8:51161063-51161567 (+)
A/J	ENSMUSG00195003205	pseudogene	Chr10:49569694-49570198 (+)
A/J	ENSMUSG00195012908	pseudogene	Chr8:51170988-51171492 (+)
A/J	ENSMUSG00195012894	pseudogene	Chr8:51164374-51164878 (+)
A/J	ENSMUSG00195012915	pseudogene	Chr8:51174473-51174976 (+)
A/J	ENSMUSG00195012900	pseudogene	Chr8:51167676-51168180 (+)
AKR/J	ENSMUSG00220006686	pseudogene	Chr8:51175834-51176338 (-)
AKR/J	ENSMUSG00220006670	pseudogene	Chr8:51169219-51169723 (-)
AKR/J	ENSMUSG00220006677	pseudogene	Chr8:51172526-51173030 (-)
AKR/J	ENSMUSG00220006664	pseudogene	Chr8:51165915-51166419 (-)
AKR/J	ENSMUSG00220006940	pseudogene	Chr10:49257419-49257923 (+)
AKR/J	ENSMUSG00220006693	pseudogene	Chr8:51179142-51179646 (-)
BALB/cJ	ENSMUSG00180014690	pseudogene	Chr8:50843310-50843814 (+)
BALB/cJ	ENSMUSG00180014679	pseudogene	Chr8:50836692-50837196 (+)
BALB/cJ	ENSMUSG00180012480	pseudogene	Chr10:49699322-49699826 (+)
BALB/cJ	ENSMUSG00180014688	pseudogene	Chr8:50839997-50840501 (+)
BALB/cJ	ENSMUSG00180014696	pseudogene	Chr8:50846622-50847126 (+)
BALB/cJ	ENSMUSG00180014706	pseudogene	Chr8:50853233-50853737 (+)
BALB/cJ	ENSMUSG00180014702	pseudogene	Chr8:50849930-50850434 (+)
C3H/HeJ	ENSMUSG00175008280	pseudogene	Chr8:51012034-51012538 (+)
C3H/HeJ	ENSMUSG00175010760	pseudogene	Chr10:49442285-49442789 (+)
C3H/HeJ	ENSMUSG00175008300	pseudogene	Chr8:51028572-51029075 (+)
C3H/HeJ	ENSMUSG00175008294	pseudogene	Chr8:51025264-51025768 (+)
C3H/HeJ	ENSMUSG00175008283	pseudogene	Chr8:51015342-51015846 (+)
C3H/HeJ	ENSMUSG00175008276	pseudogene	Chr8:51008726-51009230 (+)
C3H/HeJ	ENSMUSG00175008292	pseudogene	Chr8:51021952-51022456 (+)
C3H/HeJ	ENSMUSG00175008286	pseudogene	Chr8:51018648-51019152 (+)
C57BL/6NJ	ENSMUSG00215011731	pseudogene	Chr8:50770001-50770505 (+)
C57BL/6NJ	ENSMUSG00215011742	pseudogene	Chr8:50773309-50773813 (+)
C57BL/6NJ	ENSMUSG00215011688	pseudogene	Chr8:50760080-50760584 (+)
C57BL/6NJ	ENSMUSG00215011700	pseudogene	Chr8:50763387-50763891 (+)
C57BL/6NJ	ENSMUSG00215011713	pseudogene	Chr8:50766691-50767195 (+)
C57BL/6NJ	ENSMUSG00215011670	pseudogene	Chr8:50756770-50757274 (+)
C57BL/6NJ	ENSMUSG00215002338	pseudogene	Chr10:49204400-49204904 (+)
C57BL/6NJ	ENSMUSG00215011747	pseudogene	Chr8:50776620-50777124 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006840	pseudogene	Chr8:50702217-50702721 (+)
CAST/EiJ	ENSTCUG00005006838	pseudogene	Chr8:50686591-50687094 (+)
CAST/EiJ	ENSTCUG00005006839	pseudogene	Chr8:50698829-50699333 (+)
CAST/EiJ	ENSTCUG00005006842	pseudogene	Chr8:50705599-50706103 (+)
CAST/EiJ	ENSTCUG00005008956	pseudogene	Chr10:49396687-49397191 (+)
CAST/EiJ	ENSTCUG00005006835	pseudogene	Chr8:50580611-50581115 (+)
CAST/EiJ	ENSTCUG00005006837	pseudogene	Chr8:50683235-50683739 (+)
CBA/J	ENSMUSG00210009677	pseudogene	Chr8:50833378-50833882 (+)
CBA/J	ENSMUSG00210009708	pseudogene	Chr8:50863452-50863956 (+)
CBA/J	ENSMUSG00210009681	pseudogene	Chr8:50836775-50837279 (+)
CBA/J	ENSMUSG00210009682	pseudogene	Chr8:50840142-50840646 (+)
CBA/J	ENSMUSG00210009693	pseudogene	Chr8:50850075-50850579 (+)
CBA/J	ENSMUSG00210008759	pseudogene	Chr10:49348136-49348640 (+)
CBA/J	ENSMUSG00210009685	pseudogene	Chr8:50843449-50843953 (+)
CBA/J	ENSMUSG00210009712	pseudogene	Chr8:50866755-50867258 (+)
CBA/J	ENSMUSG00210009698	pseudogene	Chr8:50853438-50853943 (+)
CBA/J	ENSMUSG00210009702	pseudogene	Chr8:50860147-50860651 (+)
CBA/J	ENSMUSG00210009690	pseudogene	Chr8:50846759-50847263 (+)
DBA/2J	ENSMUSG00185003439	pseudogene	Chr10:49499817-49500321 (+)
DBA/2J	ENSMUSG00185008958	pseudogene	Chr8:56982407-56982911 (+)
DBA/2J	ENSMUSG00185008955	pseudogene	Chr8:56979028-56979532 (+)
DBA/2J	ENSMUSG00185008962	pseudogene	Chr8:56985792-56986296 (+)
DBA/2J	ENSMUSG00185008943	pseudogene	Chr8:56625546-56626050 (+)
DBA/2J	ENSMUSG00185008974	pseudogene	Chr8:56995930-56996434 (+)
DBA/2J	ENSMUSG00185008966	pseudogene	Chr8:56989171-56989675 (+)
DBA/2J	ENSMUSG00185008948	pseudogene	Chr8:56658520-56659024 (+)
DBA/2J	ENSMUSG00185008969	pseudogene	Chr8:56992540-56993044 (+)
DBA/2J	ENSMUSG00185008952	pseudogene	Chr8:56975636-56976140 (+)
DBA/2J	ENSMUSG00185008979	pseudogene	Chr8:57002685-57003189 (+)
FVB/NJ	ENSMUSG00205002992	pseudogene	Chr8:49907016-49907515 (+)
FVB/NJ	ENSMUSG00205005440	pseudogene	Chr10:49416471-49416975 (+)
JF1/MsJ	ENSUMUG00000006568	pseudogene	Chr8:59334649-59335152 (+)
JF1/MsJ	ENSUMUG00000006549	pseudogene	Chr8:59310938-59311442 (+)
JF1/MsJ	ENSUMUG00000006433	pseudogene	Chr8:58438751-58439255 (+)
JF1/MsJ	ENSUMUG00000031239	pseudogene	Chr10:49159410-49159914 (+)
JF1/MsJ	ENSUMUG00000006539	pseudogene	Chr8:59307555-59308059 (+)
JF1/MsJ	ENSUMUG00000006533	pseudogene	Chr8:59304164-59304668 (+)
JF1/MsJ	ENSUMUG00000006468	pseudogene	Chr8:58728376-58732287 (+)
JF1/MsJ	ENSUMUG00000006463	pseudogene	Chr8:58724992-58725496 (+)
JF1/MsJ	ENSUMUG00000006457	pseudogene	Chr8:58721599-58722103 (+)
JF1/MsJ	ENSUMUG00000006448	pseudogene	Chr8:58718204-58718708 (+)
JF1/MsJ	ENSUMUG00000006558	pseudogene	Chr8:59317700-59318204 (+)
LP/J	ENSMUSG00230008045	pseudogene	Chr8:60647009-60647513 (+)
LP/J	ENSMUSG00230008047	pseudogene	Chr8:60650378-60650882 (+)
LP/J	ENSMUSG00230008032	pseudogene	Chr8:60636867-60637371 (+)
LP/J	ENSMUSG00230008052	pseudogene	Chr8:60660523-60661027 (+)
LP/J	ENSMUSG00230024502	pseudogene	Chr10:51301261-51301765 (+)
LP/J	ENSMUSG00230008025	pseudogene	Chr8:60633476-60633980 (+)
LP/J	ENSMUSG00230008021	pseudogene	Chr8:60365994-60366498 (+)
LP/J	ENSMUSG00230008009	pseudogene	Chr8:60362685-60363189 (+)
LP/J	ENSMUSG00230008049	pseudogene	Chr8:60653768-60654272 (+)
LP/J	ENSMUSG00230008039	pseudogene	Chr8:60643629-60644133 (+)
LP/J	ENSMUSG00230008036	pseudogene	Chr8:60640246-60640750 (+)
NOD/ShiLtJ	ENSMUSG00190005803	pseudogene	Chr10:49665916-49666420 (+)
NZO/HlLtJ	ENSMUSG00225031725	pseudogene	Chr8:64064684-64065188 (+)
NZO/HlLtJ	ENSMUSG00225031702	pseudogene	Chr8:64044371-64044875 (+)
NZO/HlLtJ	ENSMUSG00225031694	pseudogene	Chr8:63843272-63843776 (+)
NZO/HlLtJ	ENSMUSG00225023000	pseudogene	Chr10:55582214-55582718 (+)
NZO/HlLtJ	ENSMUSG00225031735	pseudogene	Chr8:64071495-64071999 (+)
NZO/HlLtJ	ENSMUSG00225031730	pseudogene	Chr8:64068082-64068586 (+)
NZO/HlLtJ	ENSMUSG00225031713	pseudogene	Chr8:64054569-64055073 (+)
NZO/HlLtJ	ENSMUSG00225031717	pseudogene	Chr8:64057938-64058442 (+)
NZO/HlLtJ	ENSMUSG00225031722	pseudogene	Chr8:64061319-64061823 (+)
NZO/HlLtJ	ENSMUSG00225031707	pseudogene	Chr8:64047776-64048280 (+)
NZO/HlLtJ	ENSMUSG00225031712	pseudogene	Chr8:64051169-64051673 (+)
PWK/PhJ	ENSLUMG00010005019	pseudogene	Chr10:49294148-49294652 (+)
PWK/PhJ	ENSLUMG00010013944	pseudogene	Chr8:50476661-50477365 (+)
PWK/PhJ	ENSLUMG00010013936	pseudogene	Chr8:50473348-50473852 (+)
PWK/PhJ	ENSLUMG00010013947	pseudogene	Chr8:50480177-50480681 (+)
PWK/PhJ	ENSLUMG00010013953	pseudogene	Chr8:50712459-50712963 (+)
PWK/PhJ	ENSLUMG00010013950	pseudogene	Chr8:50709096-50709600 (+)
PWK/PhJ	ENSLUMG00010013933	pseudogene	Chr8:50463384-50463888 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005017945	pseudogene	Chr8:51688189-51688693 (+)
WSB/EiJ	ENSIUOG00005017940	pseudogene	Chr8:51684880-51685384 (+)
WSB/EiJ	ENSIUOG00005017952	pseudogene	Chr8:51691498-51692002 (+)
WSB/EiJ	ENSIUOG00005017962	pseudogene	Chr8:51694804-51695308 (+)
WSB/EiJ	ENSIUOG00005017926	pseudogene	Chr8:51586936-51587440 (+)
WSB/EiJ	ENSIUOG00005015395	pseudogene	Chr10:49301256-49301760 (+)
WSB/EiJ	ENSIUOG00005017934	pseudogene	Chr8:51681570-51682074 (+)

Homology

• Gene Tree
  Gm47612
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  131
• RefSeq
  2

• Ensembl
  ENSMUSG00000112791 (Evidence)
• NCBI Gene
  118567781

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112791	Ensembl Gene Model | MGI Sequence Detail	505	C57BL/6J
transcript	ENSMUST00000218112	Ensembl | MGI Sequence Detail	505	Not Applicable
polypeptide	XP_036012025	RefSeq | MGI Sequence Detail	506	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;