Gm47611 Pseudogene Detail

Summary

• Symbol
  Gm47611
• Name
  predicted gene, 47611

• Feature Type
  pseudogene
• IDs
  MGI:6096671
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:52399118-52402955 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  27 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096671	pseudogene	Chr10:52399118-52402955 (+)
129S1/SvImJ	ENSMUSG00200007820	pseudogene	Chr10:49296203-49300040 (+)
A/J	ENSMUSG00195002913	pseudogene	Chr10:49564197-49568034 (+)
AKR/J	ENSMUSG00220006801	pseudogene	Chr10:49251922-49255759 (+)
BALB/cJ	ENSMUSG00180012397	pseudogene	Chr10:49693825-49697662 (+)
C3H/HeJ	ENSMUSG00175010149	pseudogene	Chr10:49436788-49440625 (+)
C57BL/6NJ	ENSMUSG00215002311	pseudogene	Chr10:49198903-49202740 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008659	pseudogene	Chr10:49391194-49395035 (+)
CBA/J	ENSMUSG00210008710	pseudogene	Chr10:49342639-49346476 (+)
DBA/2J	ENSMUSG00185003320	pseudogene	Chr10:49494320-49498157 (+)
FVB/NJ	ENSMUSG00205005540	pseudogene	Chr10:49410974-49414811 (+)
JF1/MsJ	ENSUMUG00000030928	pseudogene	Chr10:49153915-49157759 (+)
LP/J	ENSMUSG00230024318	pseudogene	Chr10:51295764-51299601 (+)
NOD/ShiLtJ	ENSMUSG00190005557	pseudogene	Chr10:49660419-49664256 (+)
NZO/HlLtJ	ENSMUSG00225022835	pseudogene	Chr10:55576717-55580554 (+)
PWK/PhJ	ENSLUMG00010004616	pseudogene	Chr10:49288655-49292496 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005015070	pseudogene	Chr10:49295756-49299593 (+)

Homology

• Gene Tree
  Gm47611
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000112149 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112149	Ensembl Gene Model | MGI Sequence Detail	3838	C57BL/6J
transcript	ENSMUST00000219080	Ensembl | MGI Sequence Detail	3838	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;