Gm47578 Gene Detail

Summary

• Symbol
  Gm47578
• Name
  predicted gene, 47578

• Feature Type
  lncRNA gene
• IDs
  MGI:6096613
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:99555005-99727020 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  4562 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096613	lncRNA gene	Chr10:99555005-99727020 (+)
129S1/SvImJ	ENSMUSG00200020441	lncRNA gene	Chr10:96233259-96239344 (+)
A/J	ENSMUSG00195017013	lncRNA gene	Chr10:96498490-96670515 (+)
AKR/J	ENSMUSG00220026910	lncRNA gene	Chr10:96123025-96128604 (+)
BALB/cJ	ENSMUSG00180009923	lncRNA gene	Chr10:96506233-96678200 (+)
C3H/HeJ	ENSMUSG00175006146	lncRNA gene	Chr10:96473483-96479516 (-)
C57BL/6NJ	ENSMUSG00215007488	lncRNA gene	Chr10:96089719-96261759 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005980	lncRNA gene	Chr10:95838421-95844432 (-)
CBA/J	ENSMUSG00210023162	lncRNA gene	Chr10:96303359-96309392 (-)
DBA/2J	ENSMUSG00185019263	lncRNA gene	Chr10:96448294-96620240 (+)
FVB/NJ	ENSMUSG00205004191	lncRNA gene	Chr10:96212473-96218506 (-)
JF1/MsJ	ENSUMUG00000031123	lncRNA gene	Chr10:97857329-98029393 (+)
LP/J	ENSMUSG00230022845	lncRNA gene	Chr10:98366865-98538856 (+)
NOD/ShiLtJ	ENSMUSG00190027393	lncRNA gene	Chr10:96565696-96571275 (+)
NZO/HlLtJ	ENSMUSG00225040923	lncRNA gene	Chr10:102597864-102769834 (+)
PWK/PhJ	ENSLUMG00010006035	lncRNA gene	Chr10:96294098-96300185 (+)
SPRET/EiJ	ENSMSPG00010010720	lncRNA gene	Chr10:97949072-97956850 (+)
WSB/EiJ	ENSIUOG00005013893	lncRNA gene	Chr10:96342590-96350526 (+)

Homology

• Gene Tree
  Gm47578
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000113032 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113032	Ensembl Gene Model | MGI Sequence Detail	172016	C57BL/6J
transcript	ENSMUST00000222959	Ensembl | MGI Sequence Detail	6046	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;