Gm47560 Pseudogene Detail

Summary

• Symbol
  Gm47560
• Name
  predicted gene, 47560

• Feature Type
  pseudogene
• IDs
  MGI:6096583
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:82605578-82605739 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096583	pseudogene	Chr10:82605578-82605739 (-)
129S1/SvImJ	ENSMUSG00200051105	pseudogene	Chr10:79087949-79088110 (-)
A/J	ENSMUSG00195050124	pseudogene	Chr10:79529827-79529988 (-)
AKR/J	ENSMUSG00220049155	pseudogene	Chr10:79139349-79139510 (-)
BALB/cJ	ENSMUSG00180053261	pseudogene	Chr10:79540221-79540382 (-)
C3H/HeJ	ENSMUSG00175052625	pseudogene	Chr10:79410991-79411152 (-)
C57BL/6NJ	ENSMUSG00215053596	pseudogene	Chr10:79091934-79092095 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052268	pseudogene	Chr10:78912833-78912993 (-)
CBA/J	ENSMUSG00210050204	pseudogene	Chr10:79266980-79267141 (-)
DBA/2J	ENSMUSG00185053679	pseudogene	Chr10:79476518-79476679 (-)
FVB/NJ	ENSMUSG00205052016	pseudogene	Chr10:79193993-79194154 (-)
JF1/MsJ	ENSUMUG00000056011	pseudogene	Chr10:80866655-80866816 (-)
LP/J	ENSMUSG00230019106	pseudogene	Chr10:81378976-81379137 (-)
NOD/ShiLtJ	ENSMUSG00190052897	pseudogene	Chr10:79523015-79523176 (-)
NZO/HlLtJ	ENSMUSG00225053039	pseudogene	Chr10:85665421-85665582 (-)
PWK/PhJ	ENSLUMG00010051920	pseudogene	Chr10:79182377-79182538 (-)
SPRET/EiJ	ENSMSPG00010048020	pseudogene	Chr10:80672746-80672907 (-)
WSB/EiJ	ENSIUOG00005051957	pseudogene	Chr10:79230831-79230992 (-)

Homology

• Gene Tree
  Gm47560
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000112107 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112107	Ensembl Gene Model | MGI Sequence Detail	162	C57BL/6J
transcript	ENSMUST00000218794	Ensembl | MGI Sequence Detail	162	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm47560:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98683	Chr10:82606963-82606964 (-)	-1,225 bp