Gm47557 Gene Detail

Summary

• Symbol
  Gm47557
• Name
  predicted gene, 47557

• Feature Type
  lncRNA gene
• IDs
  MGI:6096577
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:13856577-13893110 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1103 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096577	lncRNA gene	Chr9:13856577-13893110 (+)
129S1/SvImJ	ENSMUSG00200049736	lncRNA gene	Chr9:10758291-10794981 (+)
A/J	ENSMUSG00195039100	lncRNA gene	Chr9:10643753-10680441 (+)
AKR/J	ENSMUSG00220034948	lncRNA gene	Chr9:10621236-10657924 (+)
BALB/cJ	ENSMUSG00180044037	lncRNA gene	Chr9:10767703-10804390 (+)
C3H/HeJ	ENSMUSG00175043020	lncRNA gene	Chr9:10709496-10746177 (+)
C57BL/6NJ	ENSMUSG00215038121	lncRNA gene	Chr9:10709319-10746011 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034641	lncRNA gene	Chr9:10736040-10772586 (+)
CBA/J	ENSMUSG00210045907	lncRNA gene	Chr9:10745756-10782439 (+)
DBA/2J	ENSMUSG00185026799	lncRNA gene	Chr9:10834509-10871197 (+)
FVB/NJ	ENSMUSG00205045892	lncRNA gene	Chr9:10824121-10860819 (+)
JF1/MsJ	ENSUMUG00000048231	lncRNA gene	Chr9:10807551-10844753 (+)
LP/J	ENSMUSG00230043988	lncRNA gene	Chr9:11256421-11293112 (+)
NOD/ShiLtJ	ENSMUSG00190039872	lncRNA gene	Chr9:10745034-10781715 (+)
NZO/HlLtJ	ENSMUSG00225050951	lncRNA gene	Chr9:11169457-11206072 (+)
PWK/PhJ	ENSLUMG00010048658	lncRNA gene	Chr9:10748750-10785784 (+)
SPRET/EiJ	ENSMSPG00010025469	lncRNA gene	Chr9:10908657-10949486 (+)
WSB/EiJ	ENSIUOG00005044988	lncRNA gene	Chr9:10421372-10458012 (+)

Homology

• Gene Tree
  Gm47557
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000111871 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111871	Ensembl Gene Model | MGI Sequence Detail	36534	C57BL/6J
transcript	ENSMUST00000214014	Ensembl | MGI Sequence Detail	1833	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;