Gm47552 Gene Detail

Summary

• Symbol
  Gm47552
• Name
  predicted gene, 47552

• Feature Type
  lncRNA gene
• IDs
  MGI:6096571
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:54362385-54363891 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  189 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096571	lncRNA gene	Chr12:54362385-54363891 (-)
129S1/SvImJ	ENSMUSG00200031552	lncRNA gene	Chr12:46345704-46346555 (-)
A/J	ENSMUSG00195018971	lncRNA gene	Chr12:48915440-48916306 (-)
AKR/J	ENSMUSG00220027539	lncRNA gene	Chr12:46963804-46964670 (-)
BALB/cJ	ENSMUSG00180006177	lncRNA gene	Chr12:47906999-47907865 (-)
C3H/HeJ	ENSMUSG00175011866	lncRNA gene	Chr12:50977609-50978475 (-)
C57BL/6NJ	ENSMUSG00215018605	lncRNA gene	Chr12:47279904-47280755 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009191	lncRNA gene	Chr12:47421922-47422815 (-)
CBA/J	ENSMUSG00210010112	lncRNA gene	Chr12:47451881-47452747 (-)
DBA/2J	ENSMUSG00185015261	lncRNA gene	Chr12:49397628-49398479 (-)
FVB/NJ	ENSMUSG00205013952	lncRNA gene	Chr12:47243446-47244312 (-)
JF1/MsJ	ENSUMUG00000009002	lncRNA gene	Chr12:53538159-53539030 (-)
LP/J	ENSMUSG00230016932	lncRNA gene	Chr12:56422777-56423628 (-)
NOD/ShiLtJ	ENSMUSG00190016825	lncRNA gene	Chr12:46433401-46434267 (-)
NZO/HlLtJ	ENSMUSG00225041231	lncRNA gene	Chr12:58566712-58567563 (-)
PWK/PhJ	ENSLUMG00010016521	lncRNA gene	Chr12:47597570-47598419 (-)
SPRET/EiJ	ENSMSPG00010016516	lncRNA gene	Chr12:48966852-48967693 (-)
WSB/EiJ	ENSIUOG00005003837	lncRNA gene	Chr12:47290656-47291530 (-)

Homology

• Gene Tree
  Gm47552
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000112705 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112705	Ensembl Gene Model | MGI Sequence Detail	1507	C57BL/6J
transcript	ENSMUST00000277855	Ensembl | MGI Sequence Detail	1057	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;