Gm47547 Gene Detail

Summary

• Symbol
  Gm47547
• Name
  predicted gene, 47547

• Feature Type
  lncRNA gene
• IDs
  MGI:6096561
  NCBI Gene: 115488343
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:40775589-40783571 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  88 from dbSNP Build 142
• Strain Annotations
  98

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096561	lncRNA gene	Chr14:40775589-40783571 (+)
129S1/SvImJ	ENSMUSG00200053117	lncRNA gene	Chr15:100887654-100895668 (-)
129S1/SvImJ	ENSMUSG00200053111	lncRNA gene	Chr15:97883892-97891908 (-)
129S1/SvImJ	ENSMUSG00200036434	lncRNA gene	Chr15:86623222-86631239 (+)
129S1/SvImJ	ENSMUSG00200018163	lncRNA gene	Chr14:98583062-98591078 (+)
129S1/SvImJ	ENSMUSG00200001208	lncRNA gene	Chr1:28254944-28262962 (-)
129S1/SvImJ	ENSMUSG00200051563	lncRNA gene	Chr10:75777565-75785575 (-)
129S1/SvImJ	ENSMUSG00200034515	lncRNA gene	Chr7:35392175-35400190 (-)
129S1/SvImJ	ENSMUSG00200033214	lncRNA gene	Chr13:22323023-22331040 (+)
129S1/SvImJ	ENSMUSG00200016542	lncRNA gene	Chr14:32677281-32685242 (+)
129S1/SvImJ	ENSMUSG00200041703	lncRNA gene	Chr2:169590955-169598981 (+)
A/J	ENSMUSG00195017059	lncRNA gene	Chr2:140091807-140099834 (+)
A/J	ENSMUSG00195026820	lncRNA gene	Chr2:169919383-169927409 (+)
A/J	ENSMUSG00195027359	lncRNA gene	Chr14:33683805-33691766 (+)
A/J	ENSMUSG00195051254	lncRNA gene	Chr10:76168969-76176979 (-)
A/J	ENSMUSG00195001019	lncRNA gene	Chr13:114865486-114873503 (+)
A/J	ENSMUSG00195047937	lncRNA gene	Chr15:97763090-97771106 (-)
A/J	ENSMUSG00195021253	lncRNA gene	ChrX:108267518-108275534 (-)
A/J	ENSMUSG00195035419	lncRNA gene	Chr6:130123443-130131456 (+)
A/J	ENSMUSG00195054033	lncRNA gene	Chr2:84635366-84643384 (-)
A/J	ENSMUSG00195003039	lncRNA gene	Chr4:206351-214368 (-)
AKR/J	ENSMUSG00220050894	lncRNA gene	Chr15:100739161-100747175 (-)
AKR/J	ENSMUSG00220044040	lncRNA gene	Chr6:128202151-128210164 (+)
AKR/J	ENSMUSG00220033400	lncRNA gene	Chr15:86575505-86583522 (+)
AKR/J	ENSMUSG00220043295	lncRNA gene	Chr14:32835849-32843810 (+)
AKR/J	ENSMUSG00220053190	lncRNA gene	Chr2:84540812-84548830 (-)
AKR/J	ENSMUSG00220012850	lncRNA gene	Chr13:113165245-113173262 (+)
AKR/J	ENSMUSG00220054295	lncRNA gene	Chr11:68123304-68131294 (-)
AKR/J	ENSMUSG00220038587	lncRNA gene	Chr2:169215041-169223067 (+)
AKR/J	ENSMUSG00220016851	lncRNA gene	Chr18:57743271-57751286 (+)
AKR/J	ENSMUSG00220029786	lncRNA gene	Chr17:16147721-16155738 (+)
AKR/J	ENSMUSG00220050245	lncRNA gene	Chr10:75824754-75832764 (-)
BALB/cJ	ENSMUSG00180049070	lncRNA gene	Chr15:100650320-100658334 (-)
BALB/cJ	ENSMUSG00180054968	lncRNA gene	Chr2:84563105-84571123 (-)
BALB/cJ	ENSMUSG00180049436	lncRNA gene	Chr5:103782255-103790504 (-)
BALB/cJ	ENSMUSG00180011098	lncRNA gene	Chr13:115277895-115285912 (+)
BALB/cJ	ENSMUSG00180047879	lncRNA gene	Chr14:32767907-32775868 (+)
BALB/cJ	ENSMUSG00180042172	lncRNA gene	Chr6:130191142-130199155 (+)
BALB/cJ	ENSMUSG00180020179	lncRNA gene	ChrX:104706327-104714343 (-)
BALB/cJ	ENSMUSG00180054353	lncRNA gene	Chr7:18157257-18165273 (-)
BALB/cJ	ENSMUSG00180053581	lncRNA gene	Chr10:76179397-76187407 (-)
C3H/HeJ	ENSMUSG00175021978	lncRNA gene	ChrX:108553112-108561128 (-)
C3H/HeJ	ENSMUSG00175045082	lncRNA gene	Chr6:130143847-130151860 (+)
C3H/HeJ	ENSMUSG00175053356	lncRNA gene	Chr7:19192799-19200816 (-)
C3H/HeJ	ENSMUSG00175049581	lncRNA gene	Chr15:97943578-97951594 (-)
C3H/HeJ	ENSMUSG00175032990	lncRNA gene	Chr14:32851846-32859807 (+)
C3H/HeJ	ENSMUSG00175053151	lncRNA gene	Chr10:76050014-76058024 (-)
C3H/HeJ	ENSMUSG00175045842	lncRNA gene	Chr17:15996200-16004217 (+)
C3H/HeJ	ENSMUSG00175049604	lncRNA gene	Chr15:100969023-100977038 (-)
C3H/HeJ	ENSMUSG00175020186	lncRNA gene	Chr4:151472479-151480703 (+)
C57BL/6NJ	ENSMUSG00215001003	lncRNA gene	Chr13:115453652-115461669 (+)
C57BL/6NJ	ENSMUSG00215007780	lncRNA gene	Chr12:17302263-17310135 (+)
C57BL/6NJ	ENSMUSG00215019029	lncRNA gene	Chr13:21952559-21960576 (+)
C57BL/6NJ	ENSMUSG00215053633	lncRNA gene	Chr10:75791750-75799760 (-)
C57BL/6NJ	ENSMUSG00215039668	lncRNA gene	Chr5:103190059-103198077 (+)
C57BL/6NJ	ENSMUSG00215039829	lncRNA gene	Chr14:33087471-33095432 (+)
C57BL/6NJ	ENSMUSG00215055079	lncRNA gene	Chr7:17322716-17330733 (-)
C57BL/6NJ	ENSMUSG00215039279	lncRNA gene	Chr8:67049680-67057677 (-)
C57BL/6NJ	ENSMUSG00215052171	lncRNA gene	Chr15:100700576-100708590 (-)
C57BL/6NJ	ENSMUSG00215000408	lncRNA gene	Chr1:97081567-97089582 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210050537	lncRNA gene	Chr10:75906121-75914131 (-)
CBA/J	ENSMUSG00210045291	lncRNA gene	Chr17:15804105-15812122 (+)
CBA/J	ENSMUSG00210017357	lncRNA gene	Chr6:130162431-130170444 (+)
CBA/J	ENSMUSG00210033824	lncRNA gene	Chr15:100710868-100718883 (-)
CBA/J	ENSMUSG00210033840	lncRNA gene	Chr15:97716760-97724776 (-)
CBA/J	ENSMUSG00210002777	lncRNA gene	Chr4:65175-73191 (-)
CBA/J	ENSMUSG00210053733	lncRNA gene	Chr7:18377419-18385436 (-)
CBA/J	ENSMUSG00210021157	lncRNA gene	ChrX:105467549-105475565 (-)
CBA/J	ENSMUSG00210028454	lncRNA gene	Chr13:21752145-21760162 (+)
CBA/J	ENSMUSG00210044804	lncRNA gene	Chr14:33096030-33103991 (+)
DBA/2J	ENSMUSG00185054624	lncRNA gene	Chr10:76248544-76256554 (-)
DBA/2J	ENSMUSG00185050601	lncRNA gene	Chr5:107544904-107553142 (-)
DBA/2J	ENSMUSG00185050632	lncRNA gene	Chr5:106887793-106895811 (+)
DBA/2J	ENSMUSG00185052925	lncRNA gene	Chr4:142812545-142820564 (-)
DBA/2J	ENSMUSG00185015648	lncRNA gene	Chr14:37322954-37330915 (+)
DBA/2J	ENSMUSG00185002878	lncRNA gene	Chr4:186453-194469 (-)
DBA/2J	ENSMUSG00185021673	lncRNA gene	Chr14:103910806-103918822 (+)
DBA/2J	ENSMUSG00185057319	lncRNA gene	Chr2:84559230-84567248 (-)
DBA/2J	ENSMUSG00185052857	lncRNA gene	Chr4:141957644-141965663 (-)
DBA/2J	ENSMUSG00185047267	lncRNA gene	Chr6:130858602-130866615 (+)
FVB/NJ	ENSMUSG00205039738	lncRNA gene	Chr15:86273647-86281664 (+)
FVB/NJ	ENSMUSG00205048818	lncRNA gene	Chr14:32930579-32938540 (+)
FVB/NJ	ENSMUSG00205050104	lncRNA gene	Chr7:36835333-36843336 (-)
FVB/NJ	ENSMUSG00205053214	lncRNA gene	Chr7:18166851-18174868 (-)
FVB/NJ	ENSMUSG00205053275	lncRNA gene	Chr2:83895429-83903447 (-)
FVB/NJ	ENSMUSG00205036805	lncRNA gene	Chr13:21592818-21600836 (+)
FVB/NJ	ENSMUSG00205039787	lncRNA gene	Chr17:16541181-16549198 (+)
FVB/NJ	ENSMUSG00205052402	lncRNA gene	Chr10:75938802-75946813 (-)
FVB/NJ	ENSMUSG00205001352	lncRNA gene	Chr13:114346405-114354422 (+)
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005050231	lncRNA gene	ChrX:56453020-56461022 (+)
WSB/EiJ	ENSIUOG00005043089	lncRNA gene	Chr15:97849241-97857257 (-)
WSB/EiJ	ENSIUOG00005043115	lncRNA gene	Chr15:101117112-101125126 (+)
WSB/EiJ	ENSIUOG00005005828	lncRNA gene	Chr8:1116773-1124787 (-)
WSB/EiJ	ENSIUOG00005041961	lncRNA gene	Chr14:32913389-32921406 (+)
WSB/EiJ	ENSIUOG00005013294	lncRNA gene	Chr13:114534178-114542195 (+)
WSB/EiJ	ENSIUOG00005052093	lncRNA gene	Chr10:75851406-75859418 (-)
WSB/EiJ	ENSIUOG00005000345	lncRNA gene	Chr1:96636021-96644036 (-)
WSB/EiJ	ENSIUOG00005052470	lncRNA gene	Chr17:34263268-34271286 (+)

Homology

• Gene Tree
  Gm47547
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  100

• Ensembl
  ENSMUSG00000114196 (Evidence)
• NCBI Gene
  115488343

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114196	Ensembl Gene Model | MGI Sequence Detail	7983	C57BL/6J
transcript	ENSMUST00000224095	Ensembl | MGI Sequence Detail	2734	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;