Gm47545 Gene Detail

Summary

• Symbol
  Gm47545
• Name
  predicted gene, 47545

• Feature Type
  lncRNA gene
• IDs
  MGI:6096558
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:69274693-69285058 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  416 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096558	lncRNA gene	Chr12:69274693-69285058 (+)
129S1/SvImJ	ENSMUSG00200032327	lncRNA gene	Chr12:61188437-61199052 (+)
A/J	ENSMUSG00195014737	lncRNA gene	Chr12:63883102-63893703 (+)
AKR/J	ENSMUSG00220015538	lncRNA gene	Chr12:61674285-61684899 (+)
BALB/cJ	ENSMUSG00180033539	lncRNA gene	Chr12:62882176-62892778 (+)
C3H/HeJ	ENSMUSG00175028485	lncRNA gene	Chr12:65976616-65987220 (+)
C57BL/6NJ	ENSMUSG00215029795	lncRNA gene	Chr12:62258309-62268670 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036649	lncRNA gene	Chr12:62228886-62239241 (+)
CBA/J	ENSMUSG00210030763	lncRNA gene	Chr12:62446566-62457167 (+)
DBA/2J	ENSMUSG00185004809	lncRNA gene	Chr12:64336779-64347137 (+)
FVB/NJ	ENSMUSG00205031842	lncRNA gene	Chr12:62069015-62079621 (+)
JF1/MsJ	ENSUMUG00000028299	lncRNA gene	Chr12:68313245-68323378 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190012480	lncRNA gene	Chr12:61495520-61506134 (+)
NZO/HlLtJ	ENSMUSG00225038328	lncRNA gene	Chr12:73390528-73401142 (+)
PWK/PhJ	ENSLUMG00010033485	lncRNA gene	Chr12:62392336-62409534 (+)
SPRET/EiJ	ENSMSPG00010031215	lncRNA gene	Chr12:64081102-64092054 (+)
WSB/EiJ	ENSIUOG00005013156	lncRNA gene	Chr12:62135621-62145972 (+)

Homology

• Gene Tree
  Gm47545
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000113190 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113190	Ensembl Gene Model | MGI Sequence Detail	10366	C57BL/6J
transcript	ENSMUST00000220745	Ensembl | MGI Sequence Detail	523	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm47545:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr113624	Chr12:69275406-69275415 (+)	718 bp