Gm47534 Pseudogene Detail

Summary

• Symbol
  Gm47534
• Name
  predicted gene, 47534

• Feature Type
  pseudogene
• IDs
  MGI:6096541
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:113373928-113374396 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096541	pseudogene	Chr10:113373928-113374396 (+)
129S1/SvImJ	ENSMUSG00200011360	pseudogene	Chr10:109792358-109792826 (+)
A/J	ENSMUSG00195009207	pseudogene	Chr10:110211348-110211816 (+)
AKR/J	ENSMUSG00220025081	pseudogene	Chr10:109790723-109791191 (+)
BALB/cJ	ENSMUSG00180025809	pseudogene	Chr10:110228495-110228963 (+)
C3H/HeJ	ENSMUSG00175015720	pseudogene	Chr10:110157642-110158110 (+)
C57BL/6NJ	ENSMUSG00215011924	pseudogene	Chr10:109874533-109875001 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011498	pseudogene	Chr10:109184488-109184956 (+)
CBA/J	ENSMUSG00210011525	pseudogene	Chr10:110028298-110028766 (+)
DBA/2J	ENSMUSG00185024578	pseudogene	Chr10:110143205-110143673 (+)
FVB/NJ	ENSMUSG00205010687	pseudogene	Chr10:109471254-109471722 (+)
JF1/MsJ	ENSUMUG00000011938	pseudogene	Chr10:111453020-111453488 (+)
LP/J	ENSMUSG00230026587	pseudogene	Chr10:112102855-112103323 (+)
NOD/ShiLtJ	ENSMUSG00190021041	pseudogene	Chr10:110259026-110259494 (+)
NZO/HlLtJ	ENSMUSG00225018409	pseudogene	Chr10:116357181-116357649 (+)
PWK/PhJ	ENSLUMG00010014536	pseudogene	Chr10:109842001-109842469 (+)
SPRET/EiJ	ENSMSPG00010016313	pseudogene	Chr10:111728473-111728935 (+)
WSB/EiJ	ENSIUOG00005010445	pseudogene	Chr10:109891630-109892098 (+)

Homology

• Gene Tree
  Gm47534
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000112750 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112750	Ensembl Gene Model | MGI Sequence Detail	469	C57BL/6J
transcript	ENSMUST00000219362	Ensembl | MGI Sequence Detail	469	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;