Gm47533 Gene Detail

Summary

• Symbol
  Gm47533
• Name
  predicted gene, 47533

• Feature Type
  lncRNA gene
• IDs
  MGI:6096539
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:101669958-101793178 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3323 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096539	lncRNA gene	Chr13:101669958-101793178 (+)
129S1/SvImJ	ENSMUSG00200008978	lncRNA gene	Chr13:96120523-96123594 (+)
A/J	ENSMUSG00195030110	lncRNA gene	Chr13:96709306-96712330 (+)
AKR/J	ENSMUSG00220029369	lncRNA gene	Chr13:95150919-95153992 (+)
BALB/cJ	ENSMUSG00180039155	lncRNA gene	Chr13:97268350-97271411 (+)
C3H/HeJ	ENSMUSG00175017641	lncRNA gene	Chr13:97368288-97371353 (+)
C57BL/6NJ	ENSMUSG00215035539	lncRNA gene	Chr13:97325570-97328643 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011611	lncRNA gene	Chr13:96496543-96499549 (+)
CBA/J	ENSMUSG00210011979	lncRNA gene	Chr13:96691940-96695005 (+)
DBA/2J	ENSMUSG00185019441	lncRNA gene	Chr13:100434428-100437501 (+)
FVB/NJ	ENSMUSG00205037821	lncRNA gene	Chr13:96115231-96118300 (+)
JF1/MsJ	ENSUMUG00000027319	lncRNA gene	Chr13:100040427-100043451 (+)
LP/J	ENSMUSG00230038321	lncRNA gene	Chr13:110590374-110593445 (+)
NOD/ShiLtJ	ENSMUSG00190044078	lncRNA gene	Chr13:97014045-97017067 (+)
NZO/HlLtJ	ENSMUSG00225037604	lncRNA gene	Chr13:102948937-102952006 (+)
PWK/PhJ	ENSLUMG00010025569	lncRNA gene	Chr13:96095573-96098580 (+)
SPRET/EiJ	ENSMSPG00010009499	lncRNA gene	Chr13:97463520-97466521 (+)
WSB/EiJ	ENSIUOG00005036869	lncRNA gene	Chr13:96096198-96099273 (+)

Homology

• Gene Tree
  Gm47533
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39

• Ensembl
  ENSMUSG00000114400 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114400	Ensembl Gene Model | MGI Sequence Detail	123221	C57BL/6J
transcript	ENSMUST00000322682	Ensembl | MGI Sequence Detail	1145	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm47533:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120864	Chr13:101669940-101669960 (+)	-8 bp
Tssr120866	Chr13:101791620-101791645 (+)	121,675 bp