Gm47525 Gene Detail

Summary

• Symbol
  Gm47525
• Name
  predicted gene, 47525

• Feature Type
  lncRNA gene
• IDs
  MGI:6096526
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:76300949-76302511 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  186 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096526	lncRNA gene	Chr12:76300949-76302511 (-)
129S1/SvImJ	ENSMUSG00200032448	lncRNA gene	Chr12:68246912-68247691 (-)
A/J	ENSMUSG00195033175	lncRNA gene	Chr12:70958896-70959675 (-)
AKR/J	ENSMUSG00220015644	lncRNA gene	Chr12:68717612-68718391 (-)
BALB/cJ	ENSMUSG00180036037	lncRNA gene	Chr12:69919873-69920652 (-)
C3H/HeJ	ENSMUSG00175045209	lncRNA gene	Chr12:73086666-73087445 (-)
C57BL/6NJ	ENSMUSG00215031145	lncRNA gene	Chr12:69298005-69298784 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036997	lncRNA gene	Chr12:69274089-69274854 (-)
CBA/J	ENSMUSG00210031121	lncRNA gene	Chr12:69506046-69506825 (-)
DBA/2J	ENSMUSG00185043276	lncRNA gene	Chr12:71370637-71371416 (-)
FVB/NJ	ENSMUSG00205036971	lncRNA gene	Chr12:69135196-69135975 (-)
JF1/MsJ	ENSUMUG00000026186	lncRNA gene	Chr12:75410552-75411329 (-)
LP/J	ENSMUSG00230022185	lncRNA gene	Chr12:78370664-78371443 (-)
NOD/ShiLtJ	ENSMUSG00190012825	lncRNA gene	Chr12:68557371-68558150 (-)
NZO/HlLtJ	ENSMUSG00225038872	lncRNA gene	Chr12:80432539-80433318 (-)
PWK/PhJ	ENSLUMG00010032705	lncRNA gene	Chr12:69436613-69437392 (-)
SPRET/EiJ	ENSMSPG00010020793	lncRNA gene	Chr12:71206146-71206918 (-)
WSB/EiJ	ENSIUOG00005013208	lncRNA gene	Chr12:69198651-69199430 (-)

Homology

• Gene Tree
  Gm47525
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000112274 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112274	Ensembl Gene Model | MGI Sequence Detail	1563	C57BL/6J
transcript	ENSMUST00000220205	Ensembl | MGI Sequence Detail	1563	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm47525:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116712	Chr12:76301846-76301884 (-)	646 bp
Tssr116711	Chr12:76301820-76301831 (-)	685 bp