Gm47500 Pseudogene Detail

Summary

• Symbol
  Gm47500
• Name
  predicted gene, 47500

• Feature Type
  pseudogene
• IDs
  MGI:6096484
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:79171174-79171557 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096484	pseudogene	Chr9:79171174-79171557 (+)
129S1/SvImJ	ENSMUSG00200019627	pseudogene	Chr9:76282306-76282689 (+)
A/J	ENSMUSG00195011155	pseudogene	Chr9:76092793-76093176 (+)
AKR/J	ENSMUSG00220015307	pseudogene	Chr9:76199087-76199470 (+)
BALB/cJ	ENSMUSG00180018801	pseudogene	Chr9:76206277-76206660 (+)
C3H/HeJ	ENSMUSG00175012302	pseudogene	Chr9:76265064-76265447 (+)
C57BL/6NJ	ENSMUSG00215016872	pseudogene	Chr9:76166896-76167279 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010099	pseudogene	Chr9:75836821-75837205 (+)
CBA/J	ENSMUSG00210013303	pseudogene	Chr9:76297989-76298372 (+)
DBA/2J	ENSMUSG00185008452	pseudogene	Chr9:76326386-76326769 (+)
FVB/NJ	ENSMUSG00205034217	pseudogene	Chr9:76483128-76483511 (+)
JF1/MsJ	ENSUMUG00000042816	pseudogene	Chr9:76208418-76208802 (+)
LP/J	ENSMUSG00230025856	pseudogene	Chr9:76433841-76434224 (+)
NOD/ShiLtJ	ENSMUSG00190037281	pseudogene	Chr9:76402406-76402789 (+)
NZO/HlLtJ	ENSMUSG00225025685	pseudogene	Chr9:76624260-76624643 (+)
PWK/PhJ	ENSLUMG00010016333	pseudogene	Chr9:76156350-76156734 (+)
SPRET/EiJ	ENSMSPG00010004339	pseudogene	Chr9:77422815-77423194 (+)
WSB/EiJ	ENSIUOG00005026698	pseudogene	Chr9:75742452-75742835 (+)

Homology

• Gene Tree
  Gm47500
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000111670 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111670	Ensembl Gene Model | MGI Sequence Detail	384	C57BL/6J
transcript	ENSMUST00000214836	Ensembl | MGI Sequence Detail	384	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;