Gm47480 Gene Detail

Summary

• Symbol
  Gm47480
• Name
  predicted gene, 47480

• Feature Type
  lncRNA gene
• IDs
  MGI:6096454
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:118947529-118959331 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  525 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096454	lncRNA gene	Chr10:118947529-118959331 (+)
129S1/SvImJ	ENSMUSG00200027104	lncRNA gene	Chr10:115297869-115309203 (+)
A/J	ENSMUSG00195021966	lncRNA gene	Chr10:115698403-115709661 (+)
AKR/J	ENSMUSG00220014952	lncRNA gene	Chr10:115328461-115339760 (+)
BALB/cJ	ENSMUSG00180017963	lncRNA gene	Chr10:115711183-115722431 (+)
C3H/HeJ	ENSMUSG00175025150	lncRNA gene	Chr10:115715358-115726686 (+)
C57BL/6NJ	ENSMUSG00215020534	lncRNA gene	Chr10:115356026-115367367 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032511	lncRNA gene	Chr10:114689512-114700797 (+)
CBA/J	ENSMUSG00210021543	lncRNA gene	Chr10:115552214-115563551 (+)
DBA/2J	ENSMUSG00185008981	lncRNA gene	Chr10:115662499-115673767 (+)
FVB/NJ	ENSMUSG00205029595	lncRNA gene	Chr10:114961526-114972817 (+)
JF1/MsJ	ENSUMUG00000023512	lncRNA gene	Chr10:116925451-116936669 (+)
LP/J	ENSMUSG00230025497	lncRNA gene	Chr10:117625043-117636328 (+)
NOD/ShiLtJ	ENSMUSG00190018113	lncRNA gene	Chr10:115764085-115775383 (+)
NZO/HlLtJ	ENSMUSG00225019075	lncRNA gene	Chr10:121870864-121882180 (+)
PWK/PhJ	ENSLUMG00010013166	lncRNA gene	Chr10:115327916-115339123 (+)
SPRET/EiJ	ENSMSPG00010016500	lncRNA gene	Chr10:117251150-117262443 (+)
WSB/EiJ	ENSIUOG00005014027	lncRNA gene	Chr10:115376632-115387922 (+)

Homology

• Gene Tree
  Gm47480
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000112609 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112609	Ensembl Gene Model | MGI Sequence Detail	11803	C57BL/6J
transcript	ENSMUST00000220151	Ensembl | MGI Sequence Detail	1271	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;