Gm47478 Pseudogene Detail

Summary

• Symbol
  Gm47478
• Name
  predicted gene, 47478

• Feature Type
  pseudogene
• IDs
  MGI:6096451
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:24417362-24417481 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096451	pseudogene	Chr12:24417362-24417481 (-)
129S1/SvImJ	ENSMUSG00200023964	pseudogene	Chr12:16177428-16177547 (-)
A/J	ENSMUSG00195019811	pseudogene	Chr12:18903124-18903243 (-)
AKR/J	ENSMUSG00220028992	pseudogene	Chr12:16853241-16853360 (-)
BALB/cJ	ENSMUSG00180010323	pseudogene	Chr12:17845798-17845917 (-)
C3H/HeJ	ENSMUSG00175023290	pseudogene	Chr12:20902890-20903009 (-)
C57BL/6NJ	ENSMUSG00215007061	pseudogene	Chr12:17312479-17312598 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006104	pseudogene	Chr12:17732606-17732725 (-)
CBA/J	ENSMUSG00210008730	pseudogene	Chr12:16568085-16568204 (+)
CBA/J	ENSMUSG00210007754	pseudogene	Chr12:17389107-17389226 (-)
DBA/2J	ENSMUSG00185003849	pseudogene	Chr12:19419375-19419494 (-)
FVB/NJ	ENSMUSG00205001741	pseudogene	Chr12:17537240-17537359 (-)
JF1/MsJ	ENSUMUG00000006606	pseudogene	Chr12:23638192-23638311 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190013850	pseudogene	Chr12:16352825-16352944 (-)
NOD/ShiLtJ	ENSMUSG00190008669	pseudogene	Chr12:1144659-1144775 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010004477	pseudogene	Chr12:17953359-17953478 (-)
SPRET/EiJ	ENSMSPG00010003524	pseudogene	Chr12:17801038-17801155 (-)
SPRET/EiJ	ENSMSPG00010003037	pseudogene	Chr12:18152371-18152490 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm47478
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000113417 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113417	Ensembl Gene Model | MGI Sequence Detail	120	C57BL/6J
transcript	ENSMUST00000222165	Ensembl | MGI Sequence Detail	120	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;