Gm47470 Pseudogene Detail

Summary

• Symbol
  Gm47470
• Name
  predicted gene, 47470

• Feature Type
  pseudogene
• IDs
  MGI:6096439
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:74718566-74718674 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  33

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096439	pseudogene	Chr13:74718566-74718674 (-)
129S1/SvImJ	ENSMUSG00200014410	pseudogene	Chr13:69023913-69024021 (-)
129S1/SvImJ	ENSMUSG00200014220	pseudogene	Chr13:69128545-69128653 (-)
A/J	ENSMUSG00195032126	pseudogene	Chr13:69598586-69598694 (-)
A/J	ENSMUSG00195030002	pseudogene	Chr13:69703215-69703323 (-)
AKR/J	ENSMUSG00220042063	pseudogene	Chr13:68189736-68189844 (-)
AKR/J	ENSMUSG00220039267	pseudogene	Chr13:68294379-68294487 (-)
BALB/cJ	ENSMUSG00180030375	pseudogene	Chr13:70096902-70097010 (-)
BALB/cJ	ENSMUSG00180028322	pseudogene	Chr13:70201534-70201642 (-)
C3H/HeJ	ENSMUSG00175008770	pseudogene	Chr13:70479835-70479943 (-)
C3H/HeJ	ENSMUSG00175009172	pseudogene	Chr13:70375199-70375307 (-)
C57BL/6NJ	ENSMUSG00215020860	pseudogene	Chr13:70163212-70163320 (-)
C57BL/6NJ	ENSMUSG00215020902	pseudogene	Chr13:70289776-70289884 (-)
C57BL/6NJ	ENSMUSG00215014536	pseudogene	Chr13:70262366-70262474 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012069	pseudogene	Chr13:69760777-69760885 (-)
CBA/J	ENSMUSG00210009723	pseudogene	Chr13:69797645-69797753 (-)
CBA/J	ENSMUSG00210010043	pseudogene	Chr13:69698497-69698605 (-)
DBA/2J	ENSMUSG00185019368	pseudogene	Chr13:73390044-73390152 (-)
DBA/2J	ENSMUSG00185018417	pseudogene	Chr13:73489198-73489306 (-)
FVB/NJ	ENSMUSG00205026570	pseudogene	Chr13:69181728-69181836 (-)
FVB/NJ	ENSMUSG00205034410	pseudogene	Chr13:69077093-69077201 (-)
JF1/MsJ	ENSUMUG00000032395	pseudogene	Chr13:73231458-73231566 (-)
LP/J	ENSMUSG00230028092	pseudogene	Chr13:83407863-83407971 (-)
LP/J	ENSMUSG00230028183	pseudogene	Chr13:83308719-83308827 (-)
NOD/ShiLtJ	ENSMUSG00190043320	pseudogene	Chr13:69799275-69799383 (-)
NOD/ShiLtJ	ENSMUSG00190045363	pseudogene	Chr13:69697105-69697213 (-)
NZO/HlLtJ	ENSMUSG00225028407	pseudogene	Chr13:75920304-75920412 (-)
NZO/HlLtJ	ENSMUSG00225028600	pseudogene	Chr13:75815676-75815784 (-)
PWK/PhJ	ENSLUMG00010012025	pseudogene	Chr13:69296993-69297101 (-)
SPRET/EiJ	ENSMSPG00010037011	pseudogene	Chr13:70210693-70210801 (-)
SPRET/EiJ	ENSMSPG00010037509	pseudogene	Chr13:70244170-70244278 (-)
WSB/EiJ	ENSIUOG00005025505	pseudogene	Chr13:68932507-68932615 (-)
WSB/EiJ	ENSIUOG00005024973	pseudogene	Chr13:69035602-69035710 (-)

Homology

• Gene Tree
  Gm47470
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35

• Ensembl
  ENSMUSG00000113279 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113279	Ensembl Gene Model | MGI Sequence Detail	109	C57BL/6J
transcript	ENSMUST00000221881	Ensembl | MGI Sequence Detail	109	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;