Gm47467 Gene Detail

Summary

• Symbol
  Gm47467
• Name
  predicted gene, 47467

• Feature Type
  lncRNA gene
• IDs
  MGI:6096433
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:74654928-74671250 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  627 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096433	lncRNA gene	Chr13:74654928-74671250 (-)
129S1/SvImJ	ENSMUSG00200014204	lncRNA gene	Chr13:69059432-69075110 (-)
A/J	ENSMUSG00195029963	lncRNA gene	Chr13:69634103-69649781 (-)
AKR/J	ENSMUSG00220039195	lncRNA gene	Chr13:68225255-68240933 (-)
BALB/cJ	ENSMUSG00180028276	lncRNA gene	Chr13:70132423-70148101 (-)
C3H/HeJ	ENSMUSG00175008760	lncRNA gene	Chr13:70410718-70426396 (-)
C57BL/6NJ	ENSMUSG00215014455	lncRNA gene	Chr13:70198726-70214405 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012074	lncRNA gene	Chr13:69699333-69714730 (-)
CBA/J	ENSMUSG00210009706	lncRNA gene	Chr13:69734011-69749690 (-)
DBA/2J	ENSMUSG00185018397	lncRNA gene	Chr13:73425557-73441236 (-)
FVB/NJ	ENSMUSG00205026440	lncRNA gene	Chr13:69112613-69128291 (-)
JF1/MsJ	ENSUMUG00000033074	lncRNA gene	Chr13:73170005-73185400 (-)
LP/J	ENSMUSG00230027718	lncRNA gene	Chr13:83344232-83359911 (-)
NOD/ShiLtJ	ENSMUSG00190043378	lncRNA gene	Chr13:69732664-69748357 (-)
NZO/HlLtJ	ENSMUSG00225028332	lncRNA gene	Chr13:75851195-75866873 (-)
PWK/PhJ	ENSLUMG00010012094	lncRNA gene	Chr13:69230311-69245705 (-)
SPRET/EiJ	ENSMSPG00010037044	lncRNA gene	Chr13:70154357-70169864 (-)
WSB/EiJ	ENSIUOG00005025001	lncRNA gene	Chr13:68968065-68983763 (-)

Homology

• Gene Tree
  Gm47467
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44

• Ensembl
  ENSMUSG00000113019 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113019	Ensembl Gene Model | MGI Sequence Detail	16323	C57BL/6J
transcript	ENSMUST00000220784	Ensembl | MGI Sequence Detail	3851	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm47467:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr123223	Chr13:74670542-74670562 (-)	698 bp