Gm47448 Gene Detail

Summary

• Symbol
  Gm47448
• Name
  predicted gene, 47448

• Feature Type
  lncRNA gene
• IDs
  MGI:6096404
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:45389111-45489968 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2975 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096404	lncRNA gene	Chr13:45389111-45489968 (+)
129S1/SvImJ	ENSMUSG00200036785	lncRNA gene	Chr13:42635755-42735630 (+)
A/J	ENSMUSG00195030697	lncRNA gene	Chr13:41695919-41795806 (+)
AKR/J	ENSMUSG00220009489	lncRNA gene	Chr13:41504488-41608793 (+)
BALB/cJ	ENSMUSG00180008847	lncRNA gene	Chr13:42002440-42102343 (+)
C3H/HeJ	ENSMUSG00175031403	lncRNA gene	Chr13:41966766-42066651 (+)
C57BL/6NJ	ENSMUSG00215007376	lncRNA gene	Chr13:42132886-42232852 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031851	lncRNA gene	Chr13:42036508-42142802 (+)
CBA/J	ENSMUSG00210028655	lncRNA gene	Chr13:41972280-42072159 (+)
DBA/2J	ENSMUSG00185033269	lncRNA gene	Chr13:42787893-42892195 (+)
FVB/NJ	ENSMUSG00205013297	lncRNA gene	Chr13:41724202-41847582 (+)
JF1/MsJ	ENSUMUG00000018176	lncRNA gene	Chr13:42326710-42431926 (+)
LP/J	ENSMUSG00230030505	lncRNA gene	Chr13:52104582-52204466 (+)
NOD/ShiLtJ	ENSMUSG00190012816	lncRNA gene	Chr13:42186803-42291107 (+)
NZO/HlLtJ	ENSMUSG00225036300	lncRNA gene	Chr13:45873200-45973159 (+)
PWK/PhJ	ENSLUMG00010021856	lncRNA gene	Chr13:41159735-41259605 (+)
SPRET/EiJ	ENSMSPG00010032546	lncRNA gene	Chr13:41248523-41354649 (+)
WSB/EiJ	ENSIUOG00005028171	lncRNA gene	Chr13:41310445-41414593 (+)

Homology

• Gene Tree
  Gm47448
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30

• Ensembl
  ENSMUSG00000113772 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113772	Ensembl Gene Model | MGI Sequence Detail	100858	C57BL/6J
transcript	ENSMUST00000334545	Ensembl | MGI Sequence Detail	751	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;