Gm47430 Gene Detail

Summary

• Symbol
  Gm47430
• Name
  predicted gene, 47430

• Feature Type
  lncRNA gene
• IDs
  MGI:6096377
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:78427828-78429439 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  208 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6096377	lncRNA gene	Chr9:78427828-78429439 (+)
129S1/SvImJ	ENSMUSG00200019843	lncRNA gene	Chr9:75578388-75579996 (+)
A/J	ENSMUSG00195010952	lncRNA gene	Chr9:75363068-75364680 (+)
AKR/J	ENSMUSG00220015332	lncRNA gene	Chr9:75469353-75470964 (+)
BALB/cJ	ENSMUSG00180018603	lncRNA gene	Chr9:75476596-75478207 (+)
C3H/HeJ	ENSMUSG00175012189	lncRNA gene	Chr9:75535442-75537052 (+)
C57BL/6NJ	ENSMUSG00215016135	lncRNA gene	Chr9:75414808-75416419 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010175	lncRNA gene	Chr9:75113120-75114720 (+)
CBA/J	ENSMUSG00210013349	lncRNA gene	Chr9:75568353-75569964 (+)
DBA/2J	ENSMUSG00185008574	lncRNA gene	Chr9:75596674-75598285 (+)
FVB/NJ	ENSMUSG00205030569	lncRNA gene	Chr9:75757411-75759022 (+)
JF1/MsJ	ENSUMUG00000040024	lncRNA gene	Chr9:75505329-75506955 (+)
LP/J	ENSMUSG00230026296	lncRNA gene	Chr9:75729958-75731566 (+)
NOD/ShiLtJ	ENSMUSG00190038791	lncRNA gene	Chr9:75672755-75674366 (+)
NZO/HlLtJ	ENSMUSG00225025709	lncRNA gene	Chr9:75894620-75896231 (+)
PWK/PhJ	ENSLUMG00010016907	lncRNA gene	Chr9:75437564-75439186 (+)
SPRET/EiJ	ENSMSPG00010004079	lncRNA gene	Chr9:76661683-76663302 (+)
WSB/EiJ	ENSIUOG00005025751	lncRNA gene	Chr9:75009270-75010880 (+)

Homology

• Gene Tree
  Gm47430
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000111417 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111417	Ensembl Gene Model | MGI Sequence Detail	1612	C57BL/6J
transcript	ENSMUST00000214586	Ensembl | MGI Sequence Detail	961	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm47430:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86293	Chr9:78427958-78427987 (+)	145 bp
Tssr86294	Chr9:78428004-78428017 (+)	183 bp